2019
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Fellermann, Harold; Shirt-Ediss, Ben ; Kozyra, Jerzy ; Linsley, Matt ; Lendrem, Dennis ; Isaacs, John ; Howard, Thomas Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists Journal Article Pharmaceutical Statistics, 2019. Links | BibTeX | Tags: @article{Fellermann2019,
title = {Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists},
author = { Harold Fellermann and Ben Shirt-Ediss and Jerzy Kozyra and Matt Linsley and Dennis Lendrem and John Isaacs and Thomas Howard},
doi = {10.1002/pst.1932},
year = {2019},
date = {2019-01-01},
journal = {Pharmaceutical Statistics},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Cowton, Jake; Kyriazakis, Ilias ; Bacardit, Jaume Automated Individual Pig Localisation, Tracking And Behaviour Metric Extraction Using Deep Learning Journal Article IEEE Access, pp. 1–1, 2019. Links | BibTeX | Tags: @article{Cowton2019,
title = {Automated Individual Pig Localisation, Tracking And Behaviour Metric Extraction Using Deep Learning},
author = { Jake Cowton and Ilias Kyriazakis and Jaume Bacardit},
doi = {10.1109/ACCESS.2019.2933060},
year = {2019},
date = {2019-01-01},
journal = {IEEE Access},
pages = {1--1},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Goetzfried, Marisa A; Vogele, Kilian ; Mückl, Andrea ; Kaiser, Marcus ; Holland, Nolan B; Simmel, Friedrich C; Pirzer, Tobias Periodic Operation of a Dynamic DNA Origami Structure Utilizing the Hydrophilic–Hydrophobic Phase‐Transition of Stimulus‐Sensitive Polypeptides Journal Article Small, 15 (45), pp. 1903541, 2019. Links | BibTeX | Tags: @article{Goetzfried2019,
title = {Periodic Operation of a Dynamic DNA Origami Structure Utilizing the Hydrophilic–Hydrophobic Phase‐Transition of Stimulus‐Sensitive Polypeptides},
author = { Marisa A. Goetzfried and Kilian Vogele and Andrea Mückl and Marcus Kaiser and Nolan B. Holland and Friedrich C. Simmel and Tobias Pirzer},
doi = {10.1002/smll.201903541},
year = {2019},
date = {2019-01-01},
journal = {Small},
volume = {15},
number = {45},
pages = {1903541},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Sinha, Nishant; Wang, Yujiang ; Dauwels, Justin ; Kaiser, Marcus ; Thesen, Thomas ; Forsyth, Rob ; Taylor, Peter Neal Computer modelling of connectivity change suggests epileptogenesis mechanisms in idiopathic generalised epilepsy Journal Article NeuroImage: Clinical, 21 (C), pp. 101655, 2019. Links | BibTeX | Tags: @article{Sinha2019,
title = {Computer modelling of connectivity change suggests epileptogenesis mechanisms in idiopathic generalised epilepsy},
author = { Nishant Sinha and Yujiang Wang and Justin Dauwels and Marcus Kaiser and Thomas Thesen and Rob Forsyth and Peter Neal Taylor},
doi = {10.1016/j.nicl.2019.101655},
year = {2019},
date = {2019-01-01},
journal = {NeuroImage: Clinical},
volume = {21},
number = {C},
pages = {101655},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Beal, Jacob; Nguyen, Tramy ; Gorochowski, Thomas E; Goñi-Moreno, Angel ; Scott-Brown, James ; McLaughlin, James Alastair ; Madsen, Curtis ; Aleritsch, Benjamin ; Bartley, Bryan ; Bhakta, Shyam ; Bissell, Mike ; Hair, Sebastian Castillo ; Clancy, Kevin ; Luna, Augustin ; Novère, Nicolas Le ; Palchick, Zach ; Pocock, Matthew ; Sauro, Herbert ; Sexton, John T; Tabor, Jeffrey J; Voigt, Christopher A; Zundel, Zach ; Myers, Chris ; Wipat, Anil Communicating Structure and Function in Synthetic Biology Diagrams Journal Article ACS Synthetic Biology, 8 (8), pp. 1818–1825, 2019. Links | BibTeX | Tags: @article{Beal2019,
title = {Communicating Structure and Function in Synthetic Biology Diagrams},
author = { Jacob Beal and Tramy Nguyen and Thomas E. Gorochowski and Angel Goñi-Moreno and James Scott-Brown and James Alastair McLaughlin and Curtis Madsen and Benjamin Aleritsch and Bryan Bartley and Shyam Bhakta and Mike Bissell and Sebastian Castillo Hair and Kevin Clancy and Augustin Luna and Nicolas Le Novère and Zach Palchick and Matthew Pocock and Herbert Sauro and John T. Sexton and Jeffrey J. Tabor and Christopher A. Voigt and Zach Zundel and Chris Myers and Anil Wipat},
doi = {10.1021/acssynbio.9b00139},
year = {2019},
date = {2019-01-01},
journal = {ACS Synthetic Biology},
volume = {8},
number = {8},
pages = {1818--1825},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2018
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Torelli, Emanuela; Kozyra, Jerzy Wieslaw ; Gu, Jing-Ying ; Stimming, Ulrich ; Piantanida, Luca ; Voïtchovsky, Kislon ; Krasnogor, Natalio Isothermal folding of a light-up bio-orthogonal RNA origami nanoribbon Journal Article Scientific Reports, 8 (1), 2018. Links | BibTeX | Tags: @article{Torelli2018a,
title = {Isothermal folding of a light-up bio-orthogonal RNA origami nanoribbon},
author = { Emanuela Torelli and Jerzy Wieslaw Kozyra and Jing-Ying Gu and Ulrich Stimming and Luca Piantanida and Kislon Voïtchovsky and Natalio Krasnogor},
doi = {10.1038/s41598-018-25270-6},
year = {2018},
date = {2018-12-01},
journal = {Scientific Reports},
volume = {8},
number = {1},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Keasar, Chen; McGuffin, Liam J; Wallner, Björn ; Chopra, Gaurav ; Adhikari, Badri ; Bhattacharya, Debswapna ; Blake, Lauren ; Bortot, Leandro Oliveira ; Cao, Renzhi ; Dhanasekaran, B K; Dimas, Itzhel ; Faccioli, Rodrigo Antonio ; Faraggi, Eshel ; Ganzynkowicz, Robert ; Ghosh, Sambit ; Ghosh, Soma ; Giełdoń, Artur ; Golon, Lukasz ; He, Yi ; Heo, Lim ; Hou, Jie ; Khan, Main ; Khatib, Firas ; Khoury, George A; Kieslich, Chris ; Kim, David E; Krupa, Pawel ; Lee, Gyu Rie ; Li, Hongbo ; Li, Jilong ; Lipska, Agnieszka ; Liwo, Adam ; Maghrabi, Ali Hassan A; Mirdita, Milot ; Mirzaei, Shokoufeh ; Mozolewska, Magdalena A; Onel, Melis ; Ovchinnikov, Sergey ; Shah, Anand ; Shah, Utkarsh ; Sidi, Tomer ; Sieradzan, Adam K; Ślusarz, Magdalena ; Ślusarz, Rafal ; Smadbeck, James ; Tamamis, Phanourios ; Trieber, Nicholas ; Wirecki, Tomasz ; Yin, Yanping ; Zhang, Yang ; Bacardit, Jaume ; Baranowski, Maciej ; Chapman, Nicholas ; Cooper, Seth ; Defelicibus, Alexandre ; Flatten, Jeff ; Koepnick, Brian ; Popović, Zoran ; Zaborowski, Bartlomiej ; Baker, David ; Cheng, Jianlin ; Czaplewski, Cezary ; Delbem, Alexandre Cláudio Botazzo ; Floudas, Christodoulos ; Kloczkowski, Andrzej ; Ołdziej, Stanislaw ; Levitt, Michael ; Scheraga, Harold ; Seok, Chaok ; Söding, Johannes ; Vishveshwara, Saraswathi ; Xu, Dong ; Crivelli, Silvia N An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12 Journal Article Scientific Reports, 8 (1), 2018. Links | BibTeX | Tags: @article{Keasar2018,
title = {An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12},
author = { Chen Keasar and Liam J. McGuffin and Björn Wallner and Gaurav Chopra and Badri Adhikari and Debswapna Bhattacharya and Lauren Blake and Leandro Oliveira Bortot and Renzhi Cao and B. K. Dhanasekaran and Itzhel Dimas and Rodrigo Antonio Faccioli and Eshel Faraggi and Robert Ganzynkowicz and Sambit Ghosh and Soma Ghosh and Artur Giełdoń and Lukasz Golon and Yi He and Lim Heo and Jie Hou and Main Khan and Firas Khatib and George A. Khoury and Chris Kieslich and David E. Kim and Pawel Krupa and Gyu Rie Lee and Hongbo Li and Jilong Li and Agnieszka Lipska and Adam Liwo and Ali Hassan A. Maghrabi and Milot Mirdita and Shokoufeh Mirzaei and Magdalena A. Mozolewska and Melis Onel and Sergey Ovchinnikov and Anand Shah and Utkarsh Shah and Tomer Sidi and Adam K. Sieradzan and Magdalena Ślusarz and Rafal Ślusarz and James Smadbeck and Phanourios Tamamis and Nicholas Trieber and Tomasz Wirecki and Yanping Yin and Yang Zhang and Jaume Bacardit and Maciej Baranowski and Nicholas Chapman and Seth Cooper and Alexandre Defelicibus and Jeff Flatten and Brian Koepnick and Zoran Popović and Bartlomiej Zaborowski and David Baker and Jianlin Cheng and Cezary Czaplewski and Alexandre Cláudio Botazzo Delbem and Christodoulos Floudas and Andrzej Kloczkowski and Stanislaw Ołdziej and Michael Levitt and Harold Scheraga and Chaok Seok and Johannes Söding and Saraswathi Vishveshwara and Dong Xu and Silvia N. Crivelli},
doi = {10.1038/s41598-018-26812-8},
year = {2018},
date = {2018-12-01},
journal = {Scientific Reports},
volume = {8},
number = {1},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Fellermann, Harold; Shirt-Ediss, Ben ; Kozyra, Jerzy W; Linsley, Matthew ; Lendrem, Dennis ; Howard, Thomas The PCR Simulator: an on-line application for teaching Design of Experiments and the polymerase chain reaction Journal Article bioRxiv, 415042v2 , 2018. Links | BibTeX | Tags: @article{Fellermann2018,
title = {The PCR Simulator: an on-line application for teaching Design of Experiments and the polymerase chain reaction},
author = { Harold Fellermann and Ben Shirt-Ediss and Jerzy W Kozyra and Matthew Linsley and Dennis Lendrem and Thomas Howard},
doi = {10.1101/415042},
year = {2018},
date = {2018-09-01},
journal = {bioRxiv},
volume = {415042v2},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Hordijk, Wim; Naylor, Jonathan ; Krasnogor, Natalio ; Fellermann, Harold Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World Journal Article Life, 8 (3), pp. 33, 2018. Links | BibTeX | Tags: @article{Hordijk2018,
title = {Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World},
author = { Wim Hordijk and Jonathan Naylor and Natalio Krasnogor and Harold Fellermann},
doi = {10.3390/life8030033},
year = {2018},
date = {2018-08-01},
journal = {Life},
volume = {8},
number = {3},
pages = {33},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Jiang, Shouyong; Kaiser, Marcus ; Wan, Shuzhen ; Guo, Jinglei ; Yang, Shengxiang ; Krasnogor, Natalio An Empirical Study of Dynamic Triobjective Optimisation Problems Inproceedings 2018 IEEE Congress on Evolutionary Computation (CEC), pp. 1–8, Rio de Janeiro, 2018. Links | BibTeX | Tags: @inproceedings{Jiang2018a,
title = {An Empirical Study of Dynamic Triobjective Optimisation Problems},
author = { Shouyong Jiang and Marcus Kaiser and Shuzhen Wan and Jinglei Guo and Shengxiang Yang and Natalio Krasnogor},
doi = {10.1109/CEC.2018.8477667},
year = {2018},
date = {2018-07-01},
booktitle = {2018 IEEE Congress on Evolutionary Computation (CEC)},
pages = {1--8},
address = {Rio de Janeiro},
keywords = {},
pubstate = {},
tppubtype = {inproceedings}
}
|
Jiang, Shouyong; Torres, Marina ; Pelta, David ; Krabben, Preben ; Daniel, Richard ; Luzardo, Jonathan Tellechea ; Kaiser, Marcus ; Krasnogor, Natalio Improving microbial strain design via multiobjective optimisation and decision making Inproceedings FAIM Workshop on AI for Sythetic Biology 2, pp. 1–6, Stockholm, Sweden, 2018. BibTeX | Tags: @inproceedings{Jiang2018b,
title = {Improving microbial strain design via multiobjective optimisation and decision making},
author = { Shouyong Jiang and Marina Torres and David Pelta and Preben Krabben and Richard Daniel and Jonathan Tellechea Luzardo and Marcus Kaiser and Natalio Krasnogor},
year = {2018},
date = {2018-07-01},
booktitle = {FAIM Workshop on AI for Sythetic Biology 2},
pages = {1--6},
address = {Stockholm, Sweden},
keywords = {},
pubstate = {},
tppubtype = {inproceedings}
}
|
Markovitch, Omer; Krasnogor, Natalio Predicting species emergence in simulated complex pre-biotic networks Journal Article PLOS ONE, 13 (2), pp. e0192871, 2018. Links | BibTeX | Tags: @article{Markovitch2018,
title = {Predicting species emergence in simulated complex pre-biotic networks},
author = { Omer Markovitch and Natalio Krasnogor},
doi = {10.1371/journal.pone.0192871},
year = {2018},
date = {2018-02-01},
journal = {PLOS ONE},
volume = {13},
number = {2},
pages = {e0192871},
note = {10.5281/zenodo.56534},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Torelli, Emanuela; Manzano, Marisa ; Srivastava, Sachin K; Marks, Robert S DNA origami nanorobot fiber optic genosensor to TMV Journal Article Biosensors and Bioelectronics, 99 (C), pp. 209–215, 2018. Links | BibTeX | Tags: @article{Torelli2018,
title = {DNA origami nanorobot fiber optic genosensor to TMV},
author = { Emanuela Torelli and Marisa Manzano and Sachin K. Srivastava and Robert S. Marks},
doi = {10.1016/j.bios.2017.07.051},
year = {2018},
date = {2018-01-01},
journal = {Biosensors and Bioelectronics},
volume = {99},
number = {C},
pages = {209--215},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Jiang, Shouyong; Kaiser, Marcus ; Guo, Jinglei ; Yang, Shengxiang ; Krasnogor, Natalio Less detectable environmental changes in dynamic multiobjective optimisation Inproceedings Proceedings of the Genetic and Evolutionary Computation Conference on - GECCO '18, pp. 673–680, Kyoto, Japan, 2018. Links | BibTeX | Tags: @inproceedings{Jiang2018,
title = {Less detectable environmental changes in dynamic multiobjective optimisation},
author = { Shouyong Jiang and Marcus Kaiser and Jinglei Guo and Shengxiang Yang and Natalio Krasnogor},
doi = {10.1145/3205455.3205521},
year = {2018},
date = {2018-01-01},
booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference on - GECCO '18},
pages = {673--680},
address = {Kyoto, Japan},
keywords = {},
pubstate = {},
tppubtype = {inproceedings}
}
|
McLaughlin, James Alastair; Myers, Chris J; Zundel, Zach ; Mısırlı, Göksel ; Zhang, Michael ; Ofiteru, Irina Dana ; Goñi-Moreno, Angel ; Wipat, Anil SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology Journal Article ACS Synthetic Biology, 2018. Links | BibTeX | Tags: @article{McLaughlin2018,
title = {SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology},
author = { James Alastair McLaughlin and Chris J. Myers and Zach Zundel and Göksel Mısırlı and Michael Zhang and Irina Dana Ofiteru and Angel Goñi-Moreno and Anil Wipat},
doi = {10.1021/acssynbio.7b00403},
year = {2018},
date = {2018-01-01},
journal = {ACS Synthetic Biology},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Jiang, Shouyong; Yang, Shengxiang ; Yao, Xin ; Tan, Kay Chen ; Kaiser, Marcus ; Krasnogor, Natalio Benchmark Problems for CEC2018 Competition on Dynamic Multiobjective Optimisation Technical Report Newcastle University (-), 2018. BibTeX | Tags: @techreport{Jiang2018c,
title = {Benchmark Problems for CEC2018 Competition on Dynamic Multiobjective Optimisation},
author = { Shouyong Jiang and Shengxiang Yang and Xin Yao and Kay Chen Tan and Marcus Kaiser and Natalio Krasnogor},
year = {2018},
date = {2018-01-01},
number = {-},
institution = {Newcastle University},
keywords = {},
pubstate = {},
tppubtype = {techreport}
}
|
Shirt-Ediss, Ben; Krasnogor, Natalio ; Fellermann, Harold The fittest, the common, and the dullest: Selection dynamics of exact autocatalytic replicators Inproceedings The 2018 Conference on Artificial Life, pp. 370–371, Tokyo, Japan, 2018. Links | BibTeX | Tags: @inproceedings{Shirt-Ediss2018,
title = {The fittest, the common, and the dullest: Selection dynamics of exact autocatalytic replicators},
author = { Ben Shirt-Ediss and Natalio Krasnogor and Harold Fellermann},
doi = {10.1162/isal_a_00070},
year = {2018},
date = {2018-01-01},
booktitle = {The 2018 Conference on Artificial Life},
pages = {370--371},
address = {Tokyo, Japan},
keywords = {},
pubstate = {},
tppubtype = {inproceedings}
}
|
Torres, Marina; Jiang, Shouyong ; Pelta, David ; Kaiser, Marcus ; Krasnogor, Natalio Strain Design as Multiobjective Network Interdiction Problem: A Preliminary Approach Incollection Advances in Artificial Intelligence, pp. 273–282, Springer International Publishing, 2018. Links | BibTeX | Tags: @incollection{Torres2018,
title = {Strain Design as Multiobjective Network Interdiction Problem: A Preliminary Approach},
author = { Marina Torres and Shouyong Jiang and David Pelta and Marcus Kaiser and Natalio Krasnogor},
doi = {10.1007/978-3-030-00374-6_26},
year = {2018},
date = {2018-01-01},
booktitle = {Advances in Artificial Intelligence},
pages = {273--282},
publisher = {Springer International Publishing},
keywords = {},
pubstate = {},
tppubtype = {incollection}
}
|
Revell, Jeremy; Zuliani, Paolo Stochastic Rate Parameter Inference Using the Cross-Entropy Method Incollection Computational Methods in Systems Biology, pp. 146–164, Springer International Publishing, 2018. Links | BibTeX | Tags: @incollection{Revell2018,
title = {Stochastic Rate Parameter Inference Using the Cross-Entropy Method},
author = { Jeremy Revell and Paolo Zuliani},
doi = {10.1007/978-3-319-99429-1_9},
year = {2018},
date = {2018-01-01},
booktitle = {Computational Methods in Systems Biology},
pages = {146--164},
publisher = {Springer International Publishing},
keywords = {},
pubstate = {},
tppubtype = {incollection}
}
|
Gonzalez-De-Aledo, Pablo; Vladimirov, Andrey ; Manca, Marco ; Baugh, Jerry ; Asai, Ryo ; Kaiser, Marcus ; Bauer, Roman An optimization approach for agent-based computational models of biological development Journal Article Advances in Engineering Software, 121 (C), pp. 262–275, 2018. Links | BibTeX | Tags: @article{Gonzalez-De-Aledo2018,
title = {An optimization approach for agent-based computational models of biological development},
author = { Pablo Gonzalez-De-Aledo and Andrey Vladimirov and Marco Manca and Jerry Baugh and Ryo Asai and Marcus Kaiser and Roman Bauer},
doi = {10.1016/j.advengsoft.2018.03.010},
year = {2018},
date = {2018-01-01},
journal = {Advances in Engineering Software},
volume = {121},
number = {C},
pages = {262--275},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2017
|
Lazzarini, Nicola; Bacardit, Jaume RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkers Journal Article BMC Bioinformatics, 18 (1), 2017. Links | BibTeX | Tags: @article{Lazzarini2017,
title = {RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkers},
author = { Nicola Lazzarini and Jaume Bacardit},
doi = {10.1186/s12859-017-1729-2},
year = {2017},
date = {2017-12-01},
journal = {BMC Bioinformatics},
volume = {18},
number = {1},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Lazzarini, N; Runhaar, J; Bay-Jensen, A C; Thudium, C S; Bierma-Zeinstra, S M a; Henrotin, Y; Bacardit, J A machine learning approach for the identification of new biomarkers for knee osteoarthritis development in overweight and obese women Journal Article Osteoarthritis and Cartilage, 2017. Links | BibTeX | Tags: @article{Lazzarini2017a,
title = {A machine learning approach for the identification of new biomarkers for knee osteoarthritis development in overweight and obese women},
author = { N. Lazzarini and J. Runhaar and A. C. Bay-Jensen and C. S. Thudium and S. M.a. Bierma-Zeinstra and Y. Henrotin and J. Bacardit},
doi = {10.1016/j.joca.2017.09.001},
year = {2017},
date = {2017-09-01},
journal = {Osteoarthritis and Cartilage},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Kaiser, Marcus Mechanisms of Connectome Development Journal Article Trends in Cognitive Sciences, 21 (9), pp. 703–717, 2017. Links | BibTeX | Tags: @article{Kaiser2017,
title = {Mechanisms of Connectome Development},
author = { Marcus Kaiser},
doi = {10.1016/j.tics.2017.05.010},
year = {2017},
date = {2017-09-01},
journal = {Trends in Cognitive Sciences},
volume = {21},
number = {9},
pages = {703--717},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Wang, Yujiang; Trevelyan, Andrew J; Valentin, Antonio ; Alarcon, Gonzalo ; Taylor, Peter N; Kaiser, Marcus Mechanisms underlying different onset patterns of focal seizures Journal Article PLOS Computational Biology, 13 (5), pp. e1005475, 2017. Links | BibTeX | Tags: @article{Wang2017,
title = {Mechanisms underlying different onset patterns of focal seizures},
author = { Yujiang Wang and Andrew J Trevelyan and Antonio Valentin and Gonzalo Alarcon and Peter N Taylor and Marcus Kaiser},
doi = {10.1371/journal.pcbi.1005475},
year = {2017},
date = {2017-05-01},
journal = {PLOS Computational Biology},
volume = {13},
number = {5},
pages = {e1005475},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Kozyra, Jerzy; Ceccarelli, Alessandro ; Torelli, Emanuela ; Lopiccolo, Annunziata ; Gu, Jing-Ying ; Fellermann, Harold ; Stimming, Ulrich ; Krasnogor, Natalio Designing Uniquely Addressable Bio-orthogonal Synthetic Scaffolds for DNA and RNA Origami Journal Article ACS Synthetic Biology, 2017. Links | BibTeX | Tags: @article{Kozyra2017,
title = {Designing Uniquely Addressable Bio-orthogonal Synthetic Scaffolds for DNA and RNA Origami},
author = { Jerzy Kozyra and Alessandro Ceccarelli and Emanuela Torelli and Annunziata Lopiccolo and Jing-Ying Gu and Harold Fellermann and Ulrich Stimming and Natalio Krasnogor},
doi = {10.1021/acssynbio.6b00271},
year = {2017},
date = {2017-04-01},
journal = {ACS Synthetic Biology},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Sinha, Nishant; Dauwels, Justin ; Kaiser, Marcus ; Cash, Sydney S; Westover, Brandon M; Wang, Yujiang ; Taylor, Peter N Reply: Computer models to inform epilepsy surgery strategies: prediction of postoperative outcome Journal Article Brain, 2017. Links | BibTeX | Tags: @article{Sinha2017a,
title = {Reply: Computer models to inform epilepsy surgery strategies: prediction of postoperative outcome},
author = { Nishant Sinha and Justin Dauwels and Marcus Kaiser and Sydney S. Cash and M. Brandon Westover and Yujiang Wang and Peter N. Taylor},
doi = {10.1093/brain/awx068},
year = {2017},
date = {2017-03-01},
journal = {Brain},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Sinha, Nishant; Dauwels, Justin ; Kaiser, Marcus ; Cash, Sydney S; Westover, Brandon M; Wang, Yujiang ; Taylor, Peter N Predicting neurosurgical outcomes in focal epilepsy patients using computational modelling Journal Article Brain, 140 (2), pp. 319–332, 2017. Links | BibTeX | Tags: @article{Sinha2017,
title = {Predicting neurosurgical outcomes in focal epilepsy patients using computational modelling},
author = { Nishant Sinha and Justin Dauwels and Marcus Kaiser and Sydney S. Cash and M. Brandon Westover and Yujiang Wang and Peter N. Taylor},
doi = {10.1093/brain/aww299},
year = {2017},
date = {2017-02-01},
journal = {Brain},
volume = {140},
number = {2},
pages = {319--332},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Baron, Simon; Lazzarini, Nicola ; Bacardit, Jaume Characterising the Influence of Rule-Based Knowledge Representations in Biological Knowledge Extraction from Transcriptomics Data Incollection Applications of Evolutionary Computation, pp. 125–141, Springer International Publishing, 2017. Links | BibTeX | Tags: @incollection{Baron2017,
title = {Characterising the Influence of Rule-Based Knowledge Representations in Biological Knowledge Extraction from Transcriptomics Data},
author = { Simon Baron and Nicola Lazzarini and Jaume Bacardit},
doi = {10.1007/978-3-319-55849-3_9},
year = {2017},
date = {2017-01-01},
booktitle = {Applications of Evolutionary Computation},
pages = {125--141},
publisher = {Springer International Publishing},
keywords = {},
pubstate = {},
tppubtype = {incollection}
}
|
Naylor, Jonathan; Fellermann, Harold ; Ding, Yuchun ; Mohammed, Waleed K; Jakubovics, Nicholas S; Mukherjee, Joy ; Biggs, Catherine A; Wright, Phillip C; Krasnogor, Natalio Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations Journal Article ACS Synthetic Biology, 2017. Links | BibTeX | Tags: @article{Naylor2017,
title = {Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations},
author = { Jonathan Naylor and Harold Fellermann and Yuchun Ding and Waleed K. Mohammed and Nicholas S. Jakubovics and Joy Mukherjee and Catherine A. Biggs and Phillip C. Wright and Natalio Krasnogor},
doi = {10.1021/acssynbio.6b00315},
year = {2017},
date = {2017-01-01},
journal = {ACS Synthetic Biology},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Shmarov, Fedor; Paoletti, Nicola ; Bartocci, Ezio ; Lin, Shan ; Smolka, Scott A; Zuliani, Paolo SMT-based Synthesis of Safe and Robust PID Controllers for Stochastic Hybrid Systems Incollection Hardware and Software: Verification and Testing, pp. 131–146, Springer International Publishing, 2017. Links | BibTeX | Tags: @incollection{Shmarov2017,
title = {SMT-based Synthesis of Safe and Robust PID Controllers for Stochastic Hybrid Systems},
author = { Fedor Shmarov and Nicola Paoletti and Ezio Bartocci and Shan Lin and Scott A. Smolka and Paolo Zuliani},
doi = {10.1007/978-3-319-70389-3_9},
year = {2017},
date = {2017-01-01},
booktitle = {Hardware and Software: Verification and Testing},
pages = {131--146},
publisher = {Springer International Publishing},
keywords = {},
pubstate = {},
tppubtype = {incollection}
}
|
Kozyra, Jerzy; Fellermann, Harold ; Shirt-Ediss, Ben ; Lopiccolo, Annunziata ; Krasnogor, Natalio Optimizing nucleic acid sequences for a molecular data recorder Inproceedings Proceedings of the Genetic and Evolutionary Computation Conference on - GECCO '17, pp. 1145–1152, Berlin, Germany, 2017. Links | BibTeX | Tags: @inproceedings{Kozyra2017a,
title = {Optimizing nucleic acid sequences for a molecular data recorder},
author = { Jerzy Kozyra and Harold Fellermann and Ben Shirt-Ediss and Annunziata Lopiccolo and Natalio Krasnogor},
doi = {10.1145/3071178.3071345},
year = {2017},
date = {2017-01-01},
booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference on - GECCO '17},
pages = {1145--1152},
address = {Berlin, Germany},
keywords = {},
pubstate = {},
tppubtype = {inproceedings}
}
|
Goñi-Moreno, Angel; Wipat, Anil ; Krasnogor, Natalio CSBB: synthetic biology research at Newcastle University Journal Article Biochemical Society Transactions, 45 (3), pp. 781–783, 2017. Links | BibTeX | Tags: @article{Goni-Moreno2017a,
title = {CSBB: synthetic biology research at Newcastle University},
author = { Angel Goñi-Moreno and Anil Wipat and Natalio Krasnogor},
doi = {10.1042/BST20160437},
year = {2017},
date = {2017-01-01},
journal = {Biochemical Society Transactions},
volume = {45},
number = {3},
pages = {781--783},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Bauer, Roman; Kaiser, Marcus Nonlinear growth: an origin of hub organization in complex networks Journal Article Royal Society Open Science, 4 (3), pp. 160691, 2017. Links | BibTeX | Tags: @article{Bauer2017,
title = {Nonlinear growth: an origin of hub organization in complex networks},
author = { Roman Bauer and Marcus Kaiser},
doi = {10.1098/rsos.160691},
year = {2017},
date = {2017-01-01},
journal = {Royal Society Open Science},
volume = {4},
number = {3},
pages = {160691},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2016
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Lazzarini, Nicola; Widera, Paweł ; Williamson, Stuart ; Heer, Rakesh ; Krasnogor, Natalio ; Bacardit, Jaume Functional networks inference from rule-based machine learning models Journal Article BioData Mining, 9 (1), 2016. Links | BibTeX | Tags: @article{Lazzarini2016,
title = {Functional networks inference from rule-based machine learning models},
author = { Nicola Lazzarini and Paweł Widera and Stuart Williamson and Rakesh Heer and Natalio Krasnogor and Jaume Bacardit},
doi = {10.1186/s13040-016-0106-4},
year = {2016},
date = {2016-12-01},
journal = {BioData Mining},
volume = {9},
number = {1},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Shmarov, Fedor; Zuliani, Paolo Probabilistic Hybrid Systems Verification via SMT and Monte Carlo Techniques Incollection Hardware and Software: Verification and Testing, pp. 152–168, Springer International Publishing, 2016. Links | BibTeX | Tags: @incollection{Shmarov2016,
title = {Probabilistic Hybrid Systems Verification via SMT and Monte Carlo Techniques},
author = { Fedor Shmarov and Paolo Zuliani},
doi = {10.1007/978-3-319-49052-6_10},
year = {2016},
date = {2016-01-01},
booktitle = {Hardware and Software: Verification and Testing},
pages = {152--168},
publisher = {Springer International Publishing},
keywords = {},
pubstate = {},
tppubtype = {incollection}
}
|
Fellermann, Harold; Lopiccolo, Annunziata ; Kozyra, Jerzy ; Krasnogor, Natalio In Vitro Implementation of a Stack Data Structure Based on DNA Strand Displacement Incollection Unconventional Computation and Natural Computation, pp. 87–98, Springer International Publishing, 2016. Links | BibTeX | Tags: @incollection{Fellermann2016,
title = {In Vitro Implementation of a Stack Data Structure Based on DNA Strand Displacement},
author = { Harold Fellermann and Annunziata Lopiccolo and Jerzy Kozyra and Natalio Krasnogor},
doi = {10.1007/978-3-319-41312-9_8},
year = {2016},
date = {2016-01-01},
booktitle = {Unconventional Computation and Natural Computation},
pages = {87--98},
publisher = {Springer International Publishing},
keywords = {},
pubstate = {},
tppubtype = {incollection}
}
|
