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86 entries « 1 of 5 »

Huang, Yiming; Wipat, Anil ; Bacardit, Jaume

Transcriptional biomarker discovery toward building a load stress reporting system for engineered Escherichia coli strains Journal Article

Biotechnology and Bioengineering, 2023.

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Huang, Yiming; Sinha, Nishant ; Wipat, Anil ; Bacardit, Jaume

A knowledge integration strategy for the selection of a robust multi-stress biomarkers panel for Bacillus subtilis Journal Article

Synthetic and Systems Biotechnology, 8 (1), pp. 97–106, 2023.

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Partridge, Natalie

Research Briefing - Governing synthetic biology: A food policy approach Technical Report

Newcastle University (1), 2023.

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Shirt-Ediss, Ben; Connolly, Jordan ; Elezgaray, Juan ; Torelli, Emanuela ; Navarro, Silvia Adriana ; Bacardit, Jaume ; Krasnogor, Natalio

Reverse engineering DNA origami nanostructure designs from raw scaffold and staple sequence lists Journal Article

Computational and Structural Biotechnology Journal, 21 (C), pp. 3615–3626, 2023.

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Torelli, Emanuela; Shirt-Ediss, Benjamin ; Navarro, Silvia A; Manzano, Marisa ; Vizzini, Priya ; Krasnogor, Natalio

Light-up split Broccoli aptamer as a versatile tool for RNA assembly monitoring in cell-free TX-TL system, hybrid RNA/DNA origami tagging and DNA biosensing Journal Article

bioRxiv, 2022.07.20.500791v1 , 2022.

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Huang, Yiming; Sinha, Nishant ; Wipat, Anil ; Bacardit, Jaume

A knowledge integration strategy for the selection of a robust multi-stress biomarkers panel for Bacillus subtilis Journal Article

bioRxiv, 2022.06.20.496894v1 , 2022.

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Jiang, Shouyong; Otero-Muras, Irene ; Banga, Julio R; Wang, Yong ; Kaiser, Marcus ; Krasnogor, Natalio

OptDesign: Identifying Optimum Design Strategies in Strain Engineering for Biochemical Production Journal Article

ACS Synthetic Biology, 11 (4), pp. 1531–1541, 2022.

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Tellechea-Luzardo, J; Hobbs, L

Versioning biological cells for trustworthy cell engineering Journal Article

Nature Communications, 13 (765), pp. 12, 2022.

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Li, Bowen; Mackenzie, Neil ; Shirt-Ediss, Ben ; Krasnogor, Natalio ; Zuliani, Paolo

Modelling and Optimisation of a DNA Stack Nano-Device Using Probabilistic Model Checking Inproceedings

28th International Conference on DNA Computing and Molecular Programming (DNA 28), pp. 1–22, Dagstuhl, Germany, 2022.

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Lopiccolo, Annunziata; Shirt-Ediss, Ben ; Torelli, Emanuela ; Olulana, Abimbola Feyisara Adedeji ; Castronovo, Matteo ; Fellermann, Harold ; Krasnogor, Natalio

A last-in first-out stack data structure implemented in DNA Journal Article

Nature Communications, 12 (1), 2021.

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Guyet, Aurelie; Alofi, Amirah ; Daniel, Richard

Insights into the role of lipoteichoic acids in Bacillus subtilis- a new function for MprF Journal Article

Biorxiv, N/A (N/A), pp. 1, 2021.

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Mısırlı, Göksel; Yang, Bill ; James, Katherine ; Wipat, Anil

Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits Journal Article

ACS Synthetic Biology, 10 (12), pp. 3304–3315, 2021, (Portabolomics paper).

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Velázquez, Elena; Al-Ramahi, Yamal ; Tellechea-Luzardo, Jonathan ; Krasnogor, Natalio ; de Lorenzo, Víctor

Targetron-Assisted Delivery of Exogenous DNA Sequences into Pseudomonas putida through CRISPR-Aided Counterselection Journal Article

ACS Synthetic Biology, 10 (10), pp. 2552–2565, 2021.

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Konur, Savas; Mierla, Laurentiu ; Fellermann, Harold ; Ladroue, Christophe ; Brown, Bradley ; Wipat, Anil ; Twycross, Jamie ; Dun, Boyang Peter ; Kalvala, Sara ; Gheorghe, Marian ; Krasnogor, Natalio

Toward Full-Stack In Silico Synthetic Biology: Integrating Model Specification, Simulation, Verification, and Biological Compilation Journal Article

ACS Synthetic Biology, 10 (8), pp. 1931–1945, 2021.

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Partridge, Natalie

Towards greater transparency: Digital opportunities to promote traceability in genetic engineering. Technical Report

Newcastle University (1), 2021, (This Policy Brief is an output from the N8 AgriFood Food Systems Policy Hub. It is one of a collection produced by participants on the Rapid Evidence Synthesis Training (REST) programme. REST was delivered through a collaboration between the University of Leeds, Newcastle University and the N8 AgriFood Programme, supported by Research England QR-SPF funds from the University of Leeds and the University of York.).

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Mitchell, Anca Manuela; Gogulancea, Valentina ; Smith, Wendy ; Wipat, Anil ; Ofiţeru, Irina Dana

Recombinant Protein Production with Escherichia coli in Glucose and Glycerol Limited Chemostats Journal Article

Applied Microbiology, 1 (2), pp. 239–254, 2021.

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Huang, Yiming; Smith, Wendy ; Harwood, Colin ; Wipat, Anil ; Bacardit, Jaume

Computational Strategies for the Identification of a Transcriptional Biomarker Panel to Sense Cellular Growth States in Bacillus subtilis Journal Article

Sensors, 21 (7), pp. 2436, 2021.

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de Lorenzo, Víctor; Krasnogor, Natalio ; Schmidt, Markus

For the sake of the Bioeconomy: define what a Synthetic Biology Chassis is! Journal Article

New Biotechnology, 60 (C), pp. 44–51, 2021.

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Callaghan, Melanie M; Koch, Birgit ; Hackett, Kathleen T; Klimowicz, Amy K; Schaub, Ryan E; Krasnogor, Natalio ; Dillard, Joseph P

Expression, Localization, and Protein Interactions of the Partitioning Proteins in the Gonococcal Type IV Secretion System Journal Article

Frontiers in Microbiology, 12 , 2021.

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Choo, Siew Woh; Mohammed, Waleed K; Mutha, Naresh V R; Rostami, Nadia ; Ahmed, Halah ; Krasnogor, Natalio ; Tan, Geok Yuan Annie ; Jakubovics, Nicholas S

Transcriptomic Responses to Coaggregation between Streptococcus gordonii and Streptococcus oralis Journal Article

Applied and Environmental Microbiology, 87 (22), 2021.

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86 entries « 1 of 5 »