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72 entries « 3 of 4 »

Beal, Jacob; Nguyen, Tramy ; Gorochowski, Thomas E; Goñi-Moreno, Angel ; Scott-Brown, James ; McLaughlin, James Alastair ; Madsen, Curtis ; Aleritsch, Benjamin ; Bartley, Bryan ; Bhakta, Shyam ; Bissell, Mike ; Hair, Sebastian Castillo ; Clancy, Kevin ; Luna, Augustin ; Novère, Nicolas Le ; Palchick, Zach ; Pocock, Matthew ; Sauro, Herbert ; Sexton, John T; Tabor, Jeffrey J; Voigt, Christopher A; Zundel, Zach ; Myers, Chris ; Wipat, Anil

Communicating Structure and Function in Synthetic Biology Diagrams Journal Article

ACS Synthetic Biology, 8 (8), pp. 1818–1825, 2019.

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Torelli, Emanuela; Kozyra, Jerzy Wieslaw ; Gu, Jing-Ying ; Stimming, Ulrich ; Piantanida, Luca ; Voïtchovsky, Kislon ; Krasnogor, Natalio

Isothermal folding of a light-up bio-orthogonal RNA origami nanoribbon Journal Article

Scientific Reports, 8 (1), 2018.

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Keasar, Chen; McGuffin, Liam J; Wallner, Björn ; Chopra, Gaurav ; Adhikari, Badri ; Bhattacharya, Debswapna ; Blake, Lauren ; Bortot, Leandro Oliveira ; Cao, Renzhi ; Dhanasekaran, B K; Dimas, Itzhel ; Faccioli, Rodrigo Antonio ; Faraggi, Eshel ; Ganzynkowicz, Robert ; Ghosh, Sambit ; Ghosh, Soma ; Giełdoń, Artur ; Golon, Lukasz ; He, Yi ; Heo, Lim ; Hou, Jie ; Khan, Main ; Khatib, Firas ; Khoury, George A; Kieslich, Chris ; Kim, David E; Krupa, Pawel ; Lee, Gyu Rie ; Li, Hongbo ; Li, Jilong ; Lipska, Agnieszka ; Liwo, Adam ; Maghrabi, Ali Hassan A; Mirdita, Milot ; Mirzaei, Shokoufeh ; Mozolewska, Magdalena A; Onel, Melis ; Ovchinnikov, Sergey ; Shah, Anand ; Shah, Utkarsh ; Sidi, Tomer ; Sieradzan, Adam K; Ślusarz, Magdalena ; Ślusarz, Rafal ; Smadbeck, James ; Tamamis, Phanourios ; Trieber, Nicholas ; Wirecki, Tomasz ; Yin, Yanping ; Zhang, Yang ; Bacardit, Jaume ; Baranowski, Maciej ; Chapman, Nicholas ; Cooper, Seth ; Defelicibus, Alexandre ; Flatten, Jeff ; Koepnick, Brian ; Popović, Zoran ; Zaborowski, Bartlomiej ; Baker, David ; Cheng, Jianlin ; Czaplewski, Cezary ; Delbem, Alexandre Cláudio Botazzo ; Floudas, Christodoulos ; Kloczkowski, Andrzej ; Ołdziej, Stanislaw ; Levitt, Michael ; Scheraga, Harold ; Seok, Chaok ; Söding, Johannes ; Vishveshwara, Saraswathi ; Xu, Dong ; Crivelli, Silvia N

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12 Journal Article

Scientific Reports, 8 (1), 2018.

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Fellermann, Harold; Shirt-Ediss, Ben ; Kozyra, Jerzy W; Linsley, Matthew ; Lendrem, Dennis ; Howard, Thomas

The PCR Simulator: an on-line application for teaching Design of Experiments and the polymerase chain reaction Journal Article

bioRxiv, 415042v2 , 2018.

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Hordijk, Wim; Naylor, Jonathan ; Krasnogor, Natalio ; Fellermann, Harold

Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World Journal Article

Life, 8 (3), pp. 33, 2018.

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Jiang, Shouyong; Kaiser, Marcus ; Wan, Shuzhen ; Guo, Jinglei ; Yang, Shengxiang ; Krasnogor, Natalio

An Empirical Study of Dynamic Triobjective Optimisation Problems Inproceedings

2018 IEEE Congress on Evolutionary Computation (CEC), pp. 1–8, Rio de Janeiro, 2018.

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Jiang, Shouyong; Torres, Marina ; Pelta, David ; Krabben, Preben ; Daniel, Richard ; Luzardo, Jonathan Tellechea ; Kaiser, Marcus ; Krasnogor, Natalio

Improving microbial strain design via multiobjective optimisation and decision making Inproceedings

FAIM Workshop on AI for Sythetic Biology 2, pp. 1–6, Stockholm, Sweden, 2018.

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Markovitch, Omer; Krasnogor, Natalio

Predicting species emergence in simulated complex pre-biotic networks Journal Article

PLOS ONE, 13 (2), pp. e0192871, 2018.

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Torelli, Emanuela; Manzano, Marisa ; Srivastava, Sachin K; Marks, Robert S

DNA origami nanorobot fiber optic genosensor to TMV Journal Article

Biosensors and Bioelectronics, 99 (C), pp. 209–215, 2018.

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Jiang, Shouyong; Kaiser, Marcus ; Guo, Jinglei ; Yang, Shengxiang ; Krasnogor, Natalio

Less detectable environmental changes in dynamic multiobjective optimisation Inproceedings

Proceedings of the Genetic and Evolutionary Computation Conference on - GECCO '18, pp. 673–680, Kyoto, Japan, 2018.

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McLaughlin, James Alastair; Myers, Chris J; Zundel, Zach ; Mısırlı, Göksel ; Zhang, Michael ; Ofiteru, Irina Dana ; Goñi-Moreno, Angel ; Wipat, Anil

SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology Journal Article

ACS Synthetic Biology, 2018.

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Jiang, Shouyong; Yang, Shengxiang ; Yao, Xin ; Tan, Kay Chen ; Kaiser, Marcus ; Krasnogor, Natalio

Benchmark Problems for CEC2018 Competition on Dynamic Multiobjective Optimisation Technical Report

Newcastle University (-), 2018.

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Shirt-Ediss, Ben; Krasnogor, Natalio ; Fellermann, Harold

The fittest, the common, and the dullest: Selection dynamics of exact autocatalytic replicators Inproceedings

The 2018 Conference on Artificial Life, pp. 370–371, Tokyo, Japan, 2018.

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Torres, Marina; Jiang, Shouyong ; Pelta, David ; Kaiser, Marcus ; Krasnogor, Natalio

Strain Design as Multiobjective Network Interdiction Problem: A Preliminary Approach Incollection

Advances in Artificial Intelligence, pp. 273–282, Springer International Publishing, 2018.

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Revell, Jeremy; Zuliani, Paolo

Stochastic Rate Parameter Inference Using the Cross-Entropy Method Incollection

Computational Methods in Systems Biology, pp. 146–164, Springer International Publishing, 2018.

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Gonzalez-De-Aledo, Pablo; Vladimirov, Andrey ; Manca, Marco ; Baugh, Jerry ; Asai, Ryo ; Kaiser, Marcus ; Bauer, Roman

An optimization approach for agent-based computational models of biological development Journal Article

Advances in Engineering Software, 121 (C), pp. 262–275, 2018.

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Lazzarini, Nicola; Bacardit, Jaume

RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkers Journal Article

BMC Bioinformatics, 18 (1), 2017.

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Lazzarini, N; Runhaar, J; Bay-Jensen, A C; Thudium, C S; Bierma-Zeinstra, S M a; Henrotin, Y; Bacardit, J

A machine learning approach for the identification of new biomarkers for knee osteoarthritis development in overweight and obese women Journal Article

Osteoarthritis and Cartilage, 2017.

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Kaiser, Marcus

Mechanisms of Connectome Development Journal Article

Trends in Cognitive Sciences, 21 (9), pp. 703–717, 2017.

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Wang, Yujiang; Trevelyan, Andrew J; Valentin, Antonio ; Alarcon, Gonzalo ; Taylor, Peter N; Kaiser, Marcus

Mechanisms underlying different onset patterns of focal seizures Journal Article

PLOS Computational Biology, 13 (5), pp. e1005475, 2017.

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72 entries « 3 of 4 »