Tellechea-Luzardo, Jonathan; Winterhalter, Charles ; Widera, Paweł ; Kozyra, Jerzy ; de Lorenzo, Víctor ; Krasnogor, Natalio Linking Engineered Cells to Their Digital Twins: A Version Control System for Strain Engineering Journal Article ACS Synthetic Biology, 9 (3), pp. 536–545, 2020. Links | BibTeX @article{Tellechea-Luzardo2020,
title = {Linking Engineered Cells to Their Digital Twins: A Version Control System for Strain Engineering},
author = { Jonathan Tellechea-Luzardo and Charles Winterhalter and Paweł Widera and Jerzy Kozyra and Víctor de Lorenzo and Natalio Krasnogor},
doi = {10.1021/acssynbio.9b00400},
year = {2020},
date = {2020-03-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {3},
pages = {536--545},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wipat, Anil SBOL Visual 2 Ontology Journal Article ACS Synthetic Biology, 9 (4), pp. 6, 2020. Links | BibTeX @article{Wipat2020a,
title = {SBOL Visual 2 Ontology},
author = { Anil Wipat},
url = {http://dx.doi.org/10.1021/acssynbio.0c00046},
year = {2020},
date = {2020-03-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {4},
pages = {6},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wipat, Anil ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL) Journal Article ACS Synthetic Biology, 9 (4), pp. 5, 2020. Links | BibTeX @article{Wipat2020c,
title = {ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL)},
author = { Anil Wipat},
url = {http://dx.doi.org/10.1021/acssynbio.9b00470},
year = {2020},
date = {2020-03-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {4},
pages = {5},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Riaz-Bradley, Amber; James, Katherine ; Yuzenkova, Yulia High intrinsic hydrolytic activity of cyanobacterial RNA polymerase compensates for the absence of transcription proofreading factors Journal Article Nucleic Acids Research, 48 (3), pp. 1341–1352, 2020. Links | BibTeX @article{Riaz-Bradley2020,
title = {High intrinsic hydrolytic activity of cyanobacterial RNA polymerase compensates for the absence of transcription proofreading factors},
author = { Amber Riaz-Bradley and Katherine James and Yulia Yuzenkova},
doi = {10.1093/nar/gkz1130},
year = {2020},
date = {2020-02-01},
journal = {Nucleic Acids Research},
volume = {48},
number = {3},
pages = {1341--1352},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Little, Bethany; Alshabrawy, Ossama ; Stow, Daniel ; Ferrier, Nicol I; McNaney, Roisin ; Jackson, Daniel G; Ladha, Karim ; Ladha, Cassim ; Ploetz, Thomas ; Bacardit, Jaume ; Olivier, Patrick ; Gallagher, Peter ; O'Brien, John T Deep learning-based automated speech detection as a marker of social functioning in late-life depression Journal Article Psychological Medicine, pp. 1–10, 2020. Links | BibTeX @article{Little2020,
title = {Deep learning-based automated speech detection as a marker of social functioning in late-life depression},
author = { Bethany Little and Ossama Alshabrawy and Daniel Stow and I. Nicol Ferrier and Roisin McNaney and Daniel G. Jackson and Karim Ladha and Cassim Ladha and Thomas Ploetz and Jaume Bacardit and Patrick Olivier and Peter Gallagher and John T. O'Brien},
doi = {10.1017/S0033291719003994},
year = {2020},
date = {2020-01-01},
journal = {Psychological Medicine},
pages = {1--10},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Shmarov, Fedor; Soudjani, Sadegh ; Paoletti, Nicola ; Bartocci, Ezio ; Lin, Shan ; Smolka, Scott A; Zuliani, Paolo Automated Synthesis of Safe Digital Controllers for Sampled-Data Stochastic Nonlinear Systems Journal Article IEEE Access, 8 , pp. 180825–180843, 2020. Links | BibTeX @article{Shmarov2020,
title = {Automated Synthesis of Safe Digital Controllers for Sampled-Data Stochastic Nonlinear Systems},
author = { Fedor Shmarov and Sadegh Soudjani and Nicola Paoletti and Ezio Bartocci and Shan Lin and Scott A. Smolka and Paolo Zuliani},
doi = {10.1109/ACCESS.2020.3028476},
year = {2020},
date = {2020-01-01},
journal = {IEEE Access},
volume = {8},
pages = {180825--180843},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Crowther, Matthew; Grozinger, Lewis ; Pocock, Matthew ; Taylor, Christopher P D; McLaughlin, James A; Mısırlı, Göksel ; Bartley, Bryan A; Beal, Jacob ; Goñi-Moreno, Angel ; Wipat, Anil ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL) Journal Article ACS Synthetic Biology, 9 (4), pp. 962–966, 2020. Links | BibTeX @article{Crowther2020,
title = {ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL)},
author = { Matthew Crowther and Lewis Grozinger and Matthew Pocock and Christopher P. D. Taylor and James A. McLaughlin and Göksel Mısırlı and Bryan A. Bartley and Jacob Beal and Angel Goñi-Moreno and Anil Wipat},
doi = {10.1021/acssynbio.9b00470},
year = {2020},
date = {2020-01-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {4},
pages = {962--966},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Alameer, Ali; Kyriazakis, Ilias ; Dalton, Hillary A; Miller, Amy L; Bacardit, Jaume Automatic recognition of feeding and foraging behaviour in pigs using deep learning Journal Article Biosystems Engineering, 197 (C), pp. 91–104, 2020. Links | BibTeX @article{Alameer2020,
title = {Automatic recognition of feeding and foraging behaviour in pigs using deep learning},
author = { Ali Alameer and Ilias Kyriazakis and Hillary A. Dalton and Amy L. Miller and Jaume Bacardit},
doi = {10.1016/j.biosystemseng.2020.06.013},
year = {2020},
date = {2020-01-01},
journal = {Biosystems Engineering},
volume = {197},
number = {C},
pages = {91--104},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wipat, Anil Communicating Structure and Function in Synthetic Biology Diagrams Journal Article ACS Synthetic Biology, 8 (8), pp. 8, 2019. Links | BibTeX @article{Wipat2019,
title = {Communicating Structure and Function in Synthetic Biology Diagrams},
author = { Anil Wipat},
url = {http://dx.doi.org/10.1021/acssynbio.9b00139},
year = {2019},
date = {2019-07-01},
journal = {ACS Synthetic Biology},
volume = {8},
number = {8},
pages = {8},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Hallinan, Jennifer S; Wipat, Anil ; Kitney, Richard ; Woods, Simon ; Taylor, Ken ; Goñi-Moreno, Angel Future-proofing synthetic biology: educating the next generation Journal Article Engineering Biology, 3 (2), pp. 25–31, 2019. Links | BibTeX @article{Hallinan2019,
title = {Future-proofing synthetic biology: educating the next generation},
author = { Jennifer S. Hallinan and Anil Wipat and Richard Kitney and Simon Woods and Ken Taylor and Angel Goñi-Moreno},
doi = {10.1049/enb.2019.0001},
year = {2019},
date = {2019-06-01},
journal = {Engineering Biology},
volume = {3},
number = {2},
pages = {25--31},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wade, Yana; Daniel, Richard A; Leak, David J Heterologous microcompartment assembly in Bacillaceae: Establishing the components necessary for scaffold formation Journal Article ACS Synthetic Biology, 8 (7), pp. 1642–1654, 2019. Links | BibTeX @article{Wade2019,
title = {Heterologous microcompartment assembly in Bacillaceae: Establishing the components necessary for scaffold formation},
author = { Yana Wade and Richard A. Daniel and David J. Leak},
doi = {10.1021/acssynbio.9b00155},
year = {2019},
date = {2019-06-01},
journal = {ACS Synthetic Biology},
volume = {8},
number = {7},
pages = {1642--1654},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Schumacher, Julia; Peraza, Luis R; Firbank, Michael ; Thomas, Alan J; Kaiser, Marcus ; Gallagher, Peter ; O’Brien, John T; Blamire, Andrew M; Taylor, John-Paul Dysfunctional brain dynamics and their origin in Lewy body dementia Journal Article Brain, 142 (6), pp. 1767–1782, 2019. Links | BibTeX @article{Schumacher2019,
title = {Dysfunctional brain dynamics and their origin in Lewy body dementia},
author = { Julia Schumacher and Luis R Peraza and Michael Firbank and Alan J Thomas and Marcus Kaiser and Peter Gallagher and John T O’Brien and Andrew M Blamire and John-Paul Taylor},
doi = {10.1093/brain/awz069},
year = {2019},
date = {2019-06-01},
journal = {Brain},
volume = {142},
number = {6},
pages = {1767--1782},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wipat, Anil Functional Analysis of Enzyme Families Using Residue-Residue Coevolution Similarity Networks Journal Article Biorxiv, Preprint only (Preprint only), pp. 9, 2019. Links | BibTeX @article{Wipat2019a,
title = {Functional Analysis of Enzyme Families Using Residue-Residue Coevolution Similarity Networks},
author = { Anil Wipat},
url = {http://dx.doi.org/10.1101/646539},
year = {2019},
date = {2019-05-01},
journal = {Biorxiv},
volume = {Preprint only},
number = {Preprint only},
pages = {9},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jiang, Shouyong; Kaiser, Marcus ; Yang, Shengxiang ; Kollias, Stefanos ; Krasnogor, Natalio A Scalable Test Suite for Continuous Dynamic Multiobjective Optimization Journal Article IEEE Transactions on Cybernetics, pp. 1–13, 2019. Links | BibTeX @article{Jiang2019,
title = {A Scalable Test Suite for Continuous Dynamic Multiobjective Optimization},
author = { Shouyong Jiang and Marcus Kaiser and Shengxiang Yang and Stefanos Kollias and Natalio Krasnogor},
doi = {10.1109/TCYB.2019.2896021},
year = {2019},
date = {2019-01-01},
journal = {IEEE Transactions on Cybernetics},
pages = {1--13},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Fellermann, Harold; Shirt-Ediss, Ben ; Kozyra, Jerzy ; Linsley, Matt ; Lendrem, Dennis ; Isaacs, John ; Howard, Thomas Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists Journal Article Pharmaceutical Statistics, 2019. Links | BibTeX @article{Fellermann2019,
title = {Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists},
author = { Harold Fellermann and Ben Shirt-Ediss and Jerzy Kozyra and Matt Linsley and Dennis Lendrem and John Isaacs and Thomas Howard},
doi = {10.1002/pst.1932},
year = {2019},
date = {2019-01-01},
journal = {Pharmaceutical Statistics},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Cowton, Jake; Kyriazakis, Ilias ; Bacardit, Jaume Automated Individual Pig Localisation, Tracking And Behaviour Metric Extraction Using Deep Learning Journal Article IEEE Access, pp. 1–1, 2019. Links | BibTeX @article{Cowton2019,
title = {Automated Individual Pig Localisation, Tracking And Behaviour Metric Extraction Using Deep Learning},
author = { Jake Cowton and Ilias Kyriazakis and Jaume Bacardit},
doi = {10.1109/ACCESS.2019.2933060},
year = {2019},
date = {2019-01-01},
journal = {IEEE Access},
pages = {1--1},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Grozinger, Lewis; Amos, Martyn ; Gorochowski, Thomas E; Carbonell, Pablo ; Oyarzún, Diego A; Stoof, Ruud ; Fellermann, Harold ; Zuliani, Paolo ; Tas, Huseyin ; Goñi-Moreno, Angel Pathways to cellular supremacy in biocomputing Journal Article Nature Communications, 10 (1), 2019. Links | BibTeX @article{Grozinger2019,
title = {Pathways to cellular supremacy in biocomputing},
author = { Lewis Grozinger and Martyn Amos and Thomas E. Gorochowski and Pablo Carbonell and Diego A. Oyarzún and Ruud Stoof and Harold Fellermann and Paolo Zuliani and Huseyin Tas and Angel Goñi-Moreno},
doi = {10.1038/s41467-019-13232-z},
year = {2019},
date = {2019-01-01},
journal = {Nature Communications},
volume = {10},
number = {1},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Naylor, Jonathan; Fellermann, Harold ; Krasnogor, Natalio Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations Journal Article Bioinformatics, 35 (19), pp. 3859–3860, 2019. Links | BibTeX @article{Naylor2019,
title = {Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations},
author = { Jonathan Naylor and Harold Fellermann and Natalio Krasnogor},
doi = {10.1093/bioinformatics/btz131},
year = {2019},
date = {2019-01-01},
journal = {Bioinformatics},
volume = {35},
number = {19},
pages = {3859--3860},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Goetzfried, Marisa A; Vogele, Kilian ; Mückl, Andrea ; Kaiser, Marcus ; Holland, Nolan B; Simmel, Friedrich C; Pirzer, Tobias Periodic Operation of a Dynamic DNA Origami Structure Utilizing the Hydrophilic–Hydrophobic Phase‐Transition of Stimulus‐Sensitive Polypeptides Journal Article Small, 15 (45), pp. 1903541, 2019. Links | BibTeX @article{Goetzfried2019,
title = {Periodic Operation of a Dynamic DNA Origami Structure Utilizing the Hydrophilic–Hydrophobic Phase‐Transition of Stimulus‐Sensitive Polypeptides},
author = { Marisa A. Goetzfried and Kilian Vogele and Andrea Mückl and Marcus Kaiser and Nolan B. Holland and Friedrich C. Simmel and Tobias Pirzer},
doi = {10.1002/smll.201903541},
year = {2019},
date = {2019-01-01},
journal = {Small},
volume = {15},
number = {45},
pages = {1903541},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Sinha, Nishant; Wang, Yujiang ; Dauwels, Justin ; Kaiser, Marcus ; Thesen, Thomas ; Forsyth, Rob ; Taylor, Peter Neal Computer modelling of connectivity change suggests epileptogenesis mechanisms in idiopathic generalised epilepsy Journal Article NeuroImage: Clinical, 21 (C), pp. 101655, 2019. Links | BibTeX @article{Sinha2019,
title = {Computer modelling of connectivity change suggests epileptogenesis mechanisms in idiopathic generalised epilepsy},
author = { Nishant Sinha and Yujiang Wang and Justin Dauwels and Marcus Kaiser and Thomas Thesen and Rob Forsyth and Peter Neal Taylor},
doi = {10.1016/j.nicl.2019.101655},
year = {2019},
date = {2019-01-01},
journal = {NeuroImage: Clinical},
volume = {21},
number = {C},
pages = {101655},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
