McLaughlin, James Alastair; Beal, Jacob ; Mısırlı, Göksel ; Grünberg, Raik ; Bartley, Bryan A; Scott-Brown, James ; Vaidyanathan, Prashant ; Fontanarrosa, Pedro ; Oberortner, Ernst ; Wipat, Anil ; Gorochowski, Thomas E; Myers, Chris J The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering Journal Article Frontiers in Bioengineering and Biotechnology, 8 , 2020. Links | BibTeX @article{McLaughlin2020,
title = {The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering},
author = { James Alastair McLaughlin and Jacob Beal and Göksel Mısırlı and Raik Grünberg and Bryan A. Bartley and James Scott-Brown and Prashant Vaidyanathan and Pedro Fontanarrosa and Ernst Oberortner and Anil Wipat and Thomas E. Gorochowski and Chris J. Myers},
doi = {10.3389/fbioe.2020.01009},
year = {2020},
date = {2020-09-01},
journal = {Frontiers in Bioengineering and Biotechnology},
volume = {8},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Franco, Maria A; Krasnogor, Natalio ; Bacardit, Jaume Automatic Tuning of Rule-Based Evolutionary Machine Learning via Problem Structure Identification Journal Article IEEE Computational Intelligence Magazine, 15 (3), pp. 28–46, 2020. Links | BibTeX @article{Franco2020,
title = {Automatic Tuning of Rule-Based Evolutionary Machine Learning via Problem Structure Identification},
author = { Maria A. Franco and Natalio Krasnogor and Jaume Bacardit},
doi = {10.1109/MCI.2020.2998232},
year = {2020},
date = {2020-08-01},
journal = {IEEE Computational Intelligence Magazine},
volume = {15},
number = {3},
pages = {28--46},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Koch, Birgit; Callaghan, Melanie M; Tellechea‐Luzardo, Jonathan ; Seeger, Ami Y; Dillard, Joseph P; Krasnogor, Natalio Protein interactions within and between two F‐type type IV secretion systems Journal Article Molecular Microbiology, 2020. Links | BibTeX @article{Koch2020,
title = {Protein interactions within and between two F‐type type IV secretion systems},
author = { Birgit Koch and Melanie M. Callaghan and Jonathan Tellechea‐Luzardo and Ami Y. Seeger and Joseph P. Dillard and Natalio Krasnogor},
doi = {10.1111/mmi.14582},
year = {2020},
date = {2020-08-01},
journal = {Molecular Microbiology},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Torelli, Emanuela; Kozyra, Jerzy ; Shirt-Ediss, Ben ; Piantanida, Luca ; Voïtchovsky, Kislon ; Krasnogor, Natalio Cotranscriptional Folding of a Bio-orthogonal Fluorescent Scaffolded RNA Origami Journal Article ACS Synthetic Biology, 9 (7), pp. 1682–1692, 2020. Links | BibTeX @article{Torelli2020,
title = {Cotranscriptional Folding of a Bio-orthogonal Fluorescent Scaffolded RNA Origami},
author = { Emanuela Torelli and Jerzy Kozyra and Ben Shirt-Ediss and Luca Piantanida and Kislon Voïtchovsky and Natalio Krasnogor},
doi = {10.1021/acssynbio.0c00009},
year = {2020},
date = {2020-07-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {7},
pages = {1682--1692},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kaiser, Marcus Computational models and fundamental constraints can inform the design of synthetic connectomes Journal Article Physics of Life Reviews, 33 (C), pp. 16–18, 2020. Links | BibTeX @article{Kaiser2020,
title = {Computational models and fundamental constraints can inform the design of synthetic connectomes},
author = { Marcus Kaiser},
doi = {10.1016/j.plrev.2019.08.003},
year = {2020},
date = {2020-07-01},
journal = {Physics of Life Reviews},
volume = {33},
number = {C},
pages = {16--18},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wipat, Anil Codon optimisation for maximising gene expression in multiple species and microbial consortia Journal Article Biorxiv, Preprint only (Preprint only), pp. 14, 2020. Links | BibTeX @article{Wipat2020,
title = {Codon optimisation for maximising gene expression in multiple species and microbial consortia},
author = { Anil Wipat},
url = {http://dx.doi.org/10.1101/2020.06.30.177766},
year = {2020},
date = {2020-07-01},
journal = {Biorxiv},
volume = {Preprint only},
number = {Preprint only},
pages = {14},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jiang, Shouyong; Wang, Yong ; Kaiser, Marcus ; Krasnogor, Natalio NIHBA: a network interdiction approach for metabolic engineering design Journal Article Bioinformatics, 36 (11), pp. 3482–3492, 2020. Links | BibTeX @article{Jiang2020,
title = {NIHBA: a network interdiction approach for metabolic engineering design},
author = { Shouyong Jiang and Yong Wang and Marcus Kaiser and Natalio Krasnogor},
doi = {10.1093/bioinformatics/btaa163},
year = {2020},
date = {2020-06-01},
journal = {Bioinformatics},
volume = {36},
number = {11},
pages = {3482--3492},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jiang, Shouyong; Li, Hongru ; Guo, Jinglei ; Zhong, Mingjun ; Yang, Shengxiang ; Kaiser, Marcus ; Krasnogor, Natalio AREA: An adaptive reference-set based evolutionary algorithm for multiobjective optimisation Journal Article Information Sciences, 515 (C), pp. 365–387, 2020. Links | BibTeX @article{Jiang2020a,
title = {AREA: An adaptive reference-set based evolutionary algorithm for multiobjective optimisation},
author = { Shouyong Jiang and Hongru Li and Jinglei Guo and Mingjun Zhong and Shengxiang Yang and Marcus Kaiser and Natalio Krasnogor},
doi = {10.1016/j.ins.2019.12.011},
year = {2020},
date = {2020-04-01},
journal = {Information Sciences},
volume = {515},
number = {C},
pages = {365--387},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Taylor, Ken; Woods, Simon Reflections on the practice of Responsible (Research and) Innovation in synthetic biology Journal Article New Genetics and Society, 39 (2), pp. 127–147, 2020. Links | BibTeX @article{Taylor2020,
title = {Reflections on the practice of Responsible (Research and) Innovation in synthetic biology},
author = { Ken Taylor and Simon Woods},
doi = {10.1080/14636778.2019.1709431},
year = {2020},
date = {2020-04-01},
journal = {New Genetics and Society},
volume = {39},
number = {2},
pages = {127--147},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Mısırlı, Göksel; Beal, Jacob ; Gorochowski, Thomas E; Stan, Guy-Bart ; Wipat, Anil ; Myers, Chris J SBOL Visual 2 Ontology Journal Article ACS Synthetic Biology, 9 (4), pp. 972–977, 2020. Links | BibTeX @article{Misirli2020,
title = {SBOL Visual 2 Ontology},
author = { Göksel Mısırlı and Jacob Beal and Thomas E. Gorochowski and Guy-Bart Stan and Anil Wipat and Chris J. Myers},
doi = {10.1021/acssynbio.0c00046},
year = {2020},
date = {2020-04-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {4},
pages = {972--977},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Tellechea-Luzardo, Jonathan; Winterhalter, Charles ; Widera, Paweł ; Kozyra, Jerzy ; de Lorenzo, Víctor ; Krasnogor, Natalio Linking Engineered Cells to Their Digital Twins: A Version Control System for Strain Engineering Journal Article ACS Synthetic Biology, 9 (3), pp. 536–545, 2020. Links | BibTeX @article{Tellechea-Luzardo2020,
title = {Linking Engineered Cells to Their Digital Twins: A Version Control System for Strain Engineering},
author = { Jonathan Tellechea-Luzardo and Charles Winterhalter and Paweł Widera and Jerzy Kozyra and Víctor de Lorenzo and Natalio Krasnogor},
doi = {10.1021/acssynbio.9b00400},
year = {2020},
date = {2020-03-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {3},
pages = {536--545},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wipat, Anil SBOL Visual 2 Ontology Journal Article ACS Synthetic Biology, 9 (4), pp. 6, 2020. Links | BibTeX @article{Wipat2020a,
title = {SBOL Visual 2 Ontology},
author = { Anil Wipat},
url = {http://dx.doi.org/10.1021/acssynbio.0c00046},
year = {2020},
date = {2020-03-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {4},
pages = {6},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wipat, Anil ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL) Journal Article ACS Synthetic Biology, 9 (4), pp. 5, 2020. Links | BibTeX @article{Wipat2020c,
title = {ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL)},
author = { Anil Wipat},
url = {http://dx.doi.org/10.1021/acssynbio.9b00470},
year = {2020},
date = {2020-03-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {4},
pages = {5},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Riaz-Bradley, Amber; James, Katherine ; Yuzenkova, Yulia High intrinsic hydrolytic activity of cyanobacterial RNA polymerase compensates for the absence of transcription proofreading factors Journal Article Nucleic Acids Research, 48 (3), pp. 1341–1352, 2020. Links | BibTeX @article{Riaz-Bradley2020,
title = {High intrinsic hydrolytic activity of cyanobacterial RNA polymerase compensates for the absence of transcription proofreading factors},
author = { Amber Riaz-Bradley and Katherine James and Yulia Yuzenkova},
doi = {10.1093/nar/gkz1130},
year = {2020},
date = {2020-02-01},
journal = {Nucleic Acids Research},
volume = {48},
number = {3},
pages = {1341--1352},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Little, Bethany; Alshabrawy, Ossama ; Stow, Daniel ; Ferrier, Nicol I; McNaney, Roisin ; Jackson, Daniel G; Ladha, Karim ; Ladha, Cassim ; Ploetz, Thomas ; Bacardit, Jaume ; Olivier, Patrick ; Gallagher, Peter ; O'Brien, John T Deep learning-based automated speech detection as a marker of social functioning in late-life depression Journal Article Psychological Medicine, pp. 1–10, 2020. Links | BibTeX @article{Little2020,
title = {Deep learning-based automated speech detection as a marker of social functioning in late-life depression},
author = { Bethany Little and Ossama Alshabrawy and Daniel Stow and I. Nicol Ferrier and Roisin McNaney and Daniel G. Jackson and Karim Ladha and Cassim Ladha and Thomas Ploetz and Jaume Bacardit and Patrick Olivier and Peter Gallagher and John T. O'Brien},
doi = {10.1017/S0033291719003994},
year = {2020},
date = {2020-01-01},
journal = {Psychological Medicine},
pages = {1--10},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Shmarov, Fedor; Soudjani, Sadegh ; Paoletti, Nicola ; Bartocci, Ezio ; Lin, Shan ; Smolka, Scott A; Zuliani, Paolo Automated Synthesis of Safe Digital Controllers for Sampled-Data Stochastic Nonlinear Systems Journal Article IEEE Access, 8 , pp. 180825–180843, 2020. Links | BibTeX @article{Shmarov2020,
title = {Automated Synthesis of Safe Digital Controllers for Sampled-Data Stochastic Nonlinear Systems},
author = { Fedor Shmarov and Sadegh Soudjani and Nicola Paoletti and Ezio Bartocci and Shan Lin and Scott A. Smolka and Paolo Zuliani},
doi = {10.1109/ACCESS.2020.3028476},
year = {2020},
date = {2020-01-01},
journal = {IEEE Access},
volume = {8},
pages = {180825--180843},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Crowther, Matthew; Grozinger, Lewis ; Pocock, Matthew ; Taylor, Christopher P D; McLaughlin, James A; Mısırlı, Göksel ; Bartley, Bryan A; Beal, Jacob ; Goñi-Moreno, Angel ; Wipat, Anil ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL) Journal Article ACS Synthetic Biology, 9 (4), pp. 962–966, 2020. Links | BibTeX @article{Crowther2020,
title = {ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL)},
author = { Matthew Crowther and Lewis Grozinger and Matthew Pocock and Christopher P. D. Taylor and James A. McLaughlin and Göksel Mısırlı and Bryan A. Bartley and Jacob Beal and Angel Goñi-Moreno and Anil Wipat},
doi = {10.1021/acssynbio.9b00470},
year = {2020},
date = {2020-01-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {4},
pages = {962--966},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Alameer, Ali; Kyriazakis, Ilias ; Dalton, Hillary A; Miller, Amy L; Bacardit, Jaume Automatic recognition of feeding and foraging behaviour in pigs using deep learning Journal Article Biosystems Engineering, 197 (C), pp. 91–104, 2020. Links | BibTeX @article{Alameer2020,
title = {Automatic recognition of feeding and foraging behaviour in pigs using deep learning},
author = { Ali Alameer and Ilias Kyriazakis and Hillary A. Dalton and Amy L. Miller and Jaume Bacardit},
doi = {10.1016/j.biosystemseng.2020.06.013},
year = {2020},
date = {2020-01-01},
journal = {Biosystems Engineering},
volume = {197},
number = {C},
pages = {91--104},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Grozinger, Lewis; Amos, Martyn ; Gorochowski, Thomas E; Carbonell, Pablo ; Oyarzún, Diego A; Stoof, Ruud ; Fellermann, Harold ; Zuliani, Paolo ; Tas, Huseyin ; Goñi-Moreno, Angel Pathways to cellular supremacy in biocomputing Journal Article Nature Communications, 10 (1), 2019. Links | BibTeX @article{Grozinger2019,
title = {Pathways to cellular supremacy in biocomputing},
author = { Lewis Grozinger and Martyn Amos and Thomas E. Gorochowski and Pablo Carbonell and Diego A. Oyarzún and Ruud Stoof and Harold Fellermann and Paolo Zuliani and Huseyin Tas and Angel Goñi-Moreno},
doi = {10.1038/s41467-019-13232-z},
year = {2019},
date = {2019-12-01},
journal = {Nature Communications},
volume = {10},
number = {1},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Naylor, Jonathan; Fellermann, Harold ; Krasnogor, Natalio Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations Journal Article Bioinformatics, 35 (19), pp. 3859–3860, 2019. Links | BibTeX @article{Naylor2019,
title = {Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations},
author = { Jonathan Naylor and Harold Fellermann and Natalio Krasnogor},
doi = {10.1093/bioinformatics/btz131},
year = {2019},
date = {2019-10-01},
journal = {Bioinformatics},
volume = {35},
number = {19},
pages = {3859--3860},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
