Crowther, Matthew; Grozinger, Lewis ; Pocock, Matthew ; Taylor, Christopher P D; McLaughlin, James A; Mısırlı, Göksel ; Bartley, Bryan A; Beal, Jacob ; Goñi-Moreno, Angel ; Wipat, Anil ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL) Journal Article ACS Synthetic Biology, 9 (4), pp. 962–966, 2020. Links | BibTeX @article{Crowther2020,
title = {ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL)},
author = { Matthew Crowther and Lewis Grozinger and Matthew Pocock and Christopher P. D. Taylor and James A. McLaughlin and Göksel Mısırlı and Bryan A. Bartley and Jacob Beal and Angel Goñi-Moreno and Anil Wipat},
doi = {10.1021/acssynbio.9b00470},
year = {2020},
date = {2020-01-01},
journal = {ACS Synthetic Biology},
volume = {9},
number = {4},
pages = {962--966},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wipat, Anil Communicating Structure and Function in Synthetic Biology Diagrams Journal Article ACS Synthetic Biology, 8 (8), pp. 8, 2019. Links | BibTeX @article{Wipat2019,
title = {Communicating Structure and Function in Synthetic Biology Diagrams},
author = { Anil Wipat},
url = {http://dx.doi.org/10.1021/acssynbio.9b00139},
year = {2019},
date = {2019-07-01},
journal = {ACS Synthetic Biology},
volume = {8},
number = {8},
pages = {8},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Hallinan, Jennifer S; Wipat, Anil ; Kitney, Richard ; Woods, Simon ; Taylor, Ken ; Goñi-Moreno, Angel Future-proofing synthetic biology: educating the next generation Journal Article Engineering Biology, 3 (2), pp. 25–31, 2019. Links | BibTeX @article{Hallinan2019,
title = {Future-proofing synthetic biology: educating the next generation},
author = { Jennifer S. Hallinan and Anil Wipat and Richard Kitney and Simon Woods and Ken Taylor and Angel Goñi-Moreno},
doi = {10.1049/enb.2019.0001},
year = {2019},
date = {2019-06-01},
journal = {Engineering Biology},
volume = {3},
number = {2},
pages = {25--31},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wade, Yana; Daniel, Richard A; Leak, David J Heterologous microcompartment assembly in Bacillaceae: Establishing the components necessary for scaffold formation Journal Article ACS Synthetic Biology, 8 (7), pp. 1642–1654, 2019. Links | BibTeX @article{Wade2019,
title = {Heterologous microcompartment assembly in Bacillaceae: Establishing the components necessary for scaffold formation},
author = { Yana Wade and Richard A. Daniel and David J. Leak},
doi = {10.1021/acssynbio.9b00155},
year = {2019},
date = {2019-06-01},
journal = {ACS Synthetic Biology},
volume = {8},
number = {7},
pages = {1642--1654},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Schumacher, Julia; Peraza, Luis R; Firbank, Michael ; Thomas, Alan J; Kaiser, Marcus ; Gallagher, Peter ; O’Brien, John T; Blamire, Andrew M; Taylor, John-Paul Dysfunctional brain dynamics and their origin in Lewy body dementia Journal Article Brain, 142 (6), pp. 1767–1782, 2019. Links | BibTeX @article{Schumacher2019,
title = {Dysfunctional brain dynamics and their origin in Lewy body dementia},
author = { Julia Schumacher and Luis R Peraza and Michael Firbank and Alan J Thomas and Marcus Kaiser and Peter Gallagher and John T O’Brien and Andrew M Blamire and John-Paul Taylor},
doi = {10.1093/brain/awz069},
year = {2019},
date = {2019-06-01},
journal = {Brain},
volume = {142},
number = {6},
pages = {1767--1782},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Wipat, Anil Functional Analysis of Enzyme Families Using Residue-Residue Coevolution Similarity Networks Journal Article Biorxiv, Preprint only (Preprint only), pp. 9, 2019. Links | BibTeX @article{Wipat2019a,
title = {Functional Analysis of Enzyme Families Using Residue-Residue Coevolution Similarity Networks},
author = { Anil Wipat},
url = {http://dx.doi.org/10.1101/646539},
year = {2019},
date = {2019-05-01},
journal = {Biorxiv},
volume = {Preprint only},
number = {Preprint only},
pages = {9},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jiang, Shouyong; Kaiser, Marcus ; Yang, Shengxiang ; Kollias, Stefanos ; Krasnogor, Natalio A Scalable Test Suite for Continuous Dynamic Multiobjective Optimization Journal Article IEEE Transactions on Cybernetics, pp. 1–13, 2019. Links | BibTeX @article{Jiang2019,
title = {A Scalable Test Suite for Continuous Dynamic Multiobjective Optimization},
author = { Shouyong Jiang and Marcus Kaiser and Shengxiang Yang and Stefanos Kollias and Natalio Krasnogor},
doi = {10.1109/TCYB.2019.2896021},
year = {2019},
date = {2019-01-01},
journal = {IEEE Transactions on Cybernetics},
pages = {1--13},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Fellermann, Harold; Shirt-Ediss, Ben ; Kozyra, Jerzy ; Linsley, Matt ; Lendrem, Dennis ; Isaacs, John ; Howard, Thomas Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists Journal Article Pharmaceutical Statistics, 2019. Links | BibTeX @article{Fellermann2019,
title = {Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists},
author = { Harold Fellermann and Ben Shirt-Ediss and Jerzy Kozyra and Matt Linsley and Dennis Lendrem and John Isaacs and Thomas Howard},
doi = {10.1002/pst.1932},
year = {2019},
date = {2019-01-01},
journal = {Pharmaceutical Statistics},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Cowton, Jake; Kyriazakis, Ilias ; Bacardit, Jaume Automated Individual Pig Localisation, Tracking And Behaviour Metric Extraction Using Deep Learning Journal Article IEEE Access, pp. 1–1, 2019. Links | BibTeX @article{Cowton2019,
title = {Automated Individual Pig Localisation, Tracking And Behaviour Metric Extraction Using Deep Learning},
author = { Jake Cowton and Ilias Kyriazakis and Jaume Bacardit},
doi = {10.1109/ACCESS.2019.2933060},
year = {2019},
date = {2019-01-01},
journal = {IEEE Access},
pages = {1--1},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Grozinger, Lewis; Amos, Martyn ; Gorochowski, Thomas E; Carbonell, Pablo ; Oyarzún, Diego A; Stoof, Ruud ; Fellermann, Harold ; Zuliani, Paolo ; Tas, Huseyin ; Goñi-Moreno, Angel Pathways to cellular supremacy in biocomputing Journal Article Nature Communications, 10 (1), 2019. Links | BibTeX @article{Grozinger2019,
title = {Pathways to cellular supremacy in biocomputing},
author = { Lewis Grozinger and Martyn Amos and Thomas E. Gorochowski and Pablo Carbonell and Diego A. Oyarzún and Ruud Stoof and Harold Fellermann and Paolo Zuliani and Huseyin Tas and Angel Goñi-Moreno},
doi = {10.1038/s41467-019-13232-z},
year = {2019},
date = {2019-01-01},
journal = {Nature Communications},
volume = {10},
number = {1},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Naylor, Jonathan; Fellermann, Harold ; Krasnogor, Natalio Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations Journal Article Bioinformatics, 35 (19), pp. 3859–3860, 2019. Links | BibTeX @article{Naylor2019,
title = {Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations},
author = { Jonathan Naylor and Harold Fellermann and Natalio Krasnogor},
doi = {10.1093/bioinformatics/btz131},
year = {2019},
date = {2019-01-01},
journal = {Bioinformatics},
volume = {35},
number = {19},
pages = {3859--3860},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Goetzfried, Marisa A; Vogele, Kilian ; Mückl, Andrea ; Kaiser, Marcus ; Holland, Nolan B; Simmel, Friedrich C; Pirzer, Tobias Periodic Operation of a Dynamic DNA Origami Structure Utilizing the Hydrophilic–Hydrophobic Phase‐Transition of Stimulus‐Sensitive Polypeptides Journal Article Small, 15 (45), pp. 1903541, 2019. Links | BibTeX @article{Goetzfried2019,
title = {Periodic Operation of a Dynamic DNA Origami Structure Utilizing the Hydrophilic–Hydrophobic Phase‐Transition of Stimulus‐Sensitive Polypeptides},
author = { Marisa A. Goetzfried and Kilian Vogele and Andrea Mückl and Marcus Kaiser and Nolan B. Holland and Friedrich C. Simmel and Tobias Pirzer},
doi = {10.1002/smll.201903541},
year = {2019},
date = {2019-01-01},
journal = {Small},
volume = {15},
number = {45},
pages = {1903541},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Sinha, Nishant; Wang, Yujiang ; Dauwels, Justin ; Kaiser, Marcus ; Thesen, Thomas ; Forsyth, Rob ; Taylor, Peter Neal Computer modelling of connectivity change suggests epileptogenesis mechanisms in idiopathic generalised epilepsy Journal Article NeuroImage: Clinical, 21 (C), pp. 101655, 2019. Links | BibTeX @article{Sinha2019,
title = {Computer modelling of connectivity change suggests epileptogenesis mechanisms in idiopathic generalised epilepsy},
author = { Nishant Sinha and Yujiang Wang and Justin Dauwels and Marcus Kaiser and Thomas Thesen and Rob Forsyth and Peter Neal Taylor},
doi = {10.1016/j.nicl.2019.101655},
year = {2019},
date = {2019-01-01},
journal = {NeuroImage: Clinical},
volume = {21},
number = {C},
pages = {101655},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Beal, Jacob; Nguyen, Tramy ; Gorochowski, Thomas E; Goñi-Moreno, Angel ; Scott-Brown, James ; McLaughlin, James Alastair ; Madsen, Curtis ; Aleritsch, Benjamin ; Bartley, Bryan ; Bhakta, Shyam ; Bissell, Mike ; Hair, Sebastian Castillo ; Clancy, Kevin ; Luna, Augustin ; Novère, Nicolas Le ; Palchick, Zach ; Pocock, Matthew ; Sauro, Herbert ; Sexton, John T; Tabor, Jeffrey J; Voigt, Christopher A; Zundel, Zach ; Myers, Chris ; Wipat, Anil Communicating Structure and Function in Synthetic Biology Diagrams Journal Article ACS Synthetic Biology, 8 (8), pp. 1818–1825, 2019. Links | BibTeX @article{Beal2019,
title = {Communicating Structure and Function in Synthetic Biology Diagrams},
author = { Jacob Beal and Tramy Nguyen and Thomas E. Gorochowski and Angel Goñi-Moreno and James Scott-Brown and James Alastair McLaughlin and Curtis Madsen and Benjamin Aleritsch and Bryan Bartley and Shyam Bhakta and Mike Bissell and Sebastian Castillo Hair and Kevin Clancy and Augustin Luna and Nicolas Le Novère and Zach Palchick and Matthew Pocock and Herbert Sauro and John T. Sexton and Jeffrey J. Tabor and Christopher A. Voigt and Zach Zundel and Chris Myers and Anil Wipat},
doi = {10.1021/acssynbio.9b00139},
year = {2019},
date = {2019-01-01},
journal = {ACS Synthetic Biology},
volume = {8},
number = {8},
pages = {1818--1825},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Torelli, Emanuela; Kozyra, Jerzy Wieslaw ; Gu, Jing-Ying ; Stimming, Ulrich ; Piantanida, Luca ; Voïtchovsky, Kislon ; Krasnogor, Natalio Isothermal folding of a light-up bio-orthogonal RNA origami nanoribbon Journal Article Scientific Reports, 8 (1), 2018. Links | BibTeX @article{Torelli2018a,
title = {Isothermal folding of a light-up bio-orthogonal RNA origami nanoribbon},
author = { Emanuela Torelli and Jerzy Wieslaw Kozyra and Jing-Ying Gu and Ulrich Stimming and Luca Piantanida and Kislon Voïtchovsky and Natalio Krasnogor},
doi = {10.1038/s41598-018-25270-6},
year = {2018},
date = {2018-12-01},
journal = {Scientific Reports},
volume = {8},
number = {1},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Hordijk, Wim; Naylor, Jonathan ; Krasnogor, Natalio ; Fellermann, Harold Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World Journal Article Life, 8 (3), pp. 33, 2018. Links | BibTeX @article{Hordijk2018,
title = {Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World},
author = { Wim Hordijk and Jonathan Naylor and Natalio Krasnogor and Harold Fellermann},
doi = {10.3390/life8030033},
year = {2018},
date = {2018-08-01},
journal = {Life},
volume = {8},
number = {3},
pages = {33},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Jiang, Shouyong; Kaiser, Marcus ; Wan, Shuzhen ; Guo, Jinglei ; Yang, Shengxiang ; Krasnogor, Natalio An Empirical Study of Dynamic Triobjective Optimisation Problems Inproceedings 2018 IEEE Congress on Evolutionary Computation (CEC), pp. 1–8, Rio de Janeiro, 2018. Links | BibTeX @inproceedings{Jiang2018a,
title = {An Empirical Study of Dynamic Triobjective Optimisation Problems},
author = { Shouyong Jiang and Marcus Kaiser and Shuzhen Wan and Jinglei Guo and Shengxiang Yang and Natalio Krasnogor},
doi = {10.1109/CEC.2018.8477667},
year = {2018},
date = {2018-07-01},
booktitle = {2018 IEEE Congress on Evolutionary Computation (CEC)},
pages = {1--8},
address = {Rio de Janeiro},
keywords = {},
pubstate = {},
tppubtype = {inproceedings}
}
|
Jiang, Shouyong; Torres, Marina ; Pelta, David ; Krabben, Preben ; Daniel, Richard ; Luzardo, Jonathan Tellechea ; Kaiser, Marcus ; Krasnogor, Natalio Improving microbial strain design via multiobjective optimisation and decision making Inproceedings FAIM Workshop on AI for Sythetic Biology 2, pp. 1–6, Stockholm, Sweden, 2018. BibTeX @inproceedings{Jiang2018b,
title = {Improving microbial strain design via multiobjective optimisation and decision making},
author = { Shouyong Jiang and Marina Torres and David Pelta and Preben Krabben and Richard Daniel and Jonathan Tellechea Luzardo and Marcus Kaiser and Natalio Krasnogor},
year = {2018},
date = {2018-07-01},
booktitle = {FAIM Workshop on AI for Sythetic Biology 2},
pages = {1--6},
address = {Stockholm, Sweden},
keywords = {},
pubstate = {},
tppubtype = {inproceedings}
}
|
Markovitch, Omer; Krasnogor, Natalio Predicting species emergence in simulated complex pre-biotic networks Journal Article PLOS ONE, 13 (2), pp. e0192871, 2018. Links | BibTeX @article{Markovitch2018,
title = {Predicting species emergence in simulated complex pre-biotic networks},
author = { Omer Markovitch and Natalio Krasnogor},
doi = {10.1371/journal.pone.0192871},
year = {2018},
date = {2018-02-01},
journal = {PLOS ONE},
volume = {13},
number = {2},
pages = {e0192871},
note = {10.5281/zenodo.56534},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
Torelli, Emanuela; Manzano, Marisa ; Srivastava, Sachin K; Marks, Robert S DNA origami nanorobot fiber optic genosensor to TMV Journal Article Biosensors and Bioelectronics, 99 (C), pp. 209–215, 2018. Links | BibTeX @article{Torelli2018,
title = {DNA origami nanorobot fiber optic genosensor to TMV},
author = { Emanuela Torelli and Marisa Manzano and Sachin K. Srivastava and Robert S. Marks},
doi = {10.1016/j.bios.2017.07.051},
year = {2018},
date = {2018-01-01},
journal = {Biosensors and Bioelectronics},
volume = {99},
number = {C},
pages = {209--215},
keywords = {},
pubstate = {},
tppubtype = {article}
}
|
