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81 entries « 1 of 5 »

Torelli, Emanuela; Shirt-Ediss, Benjamin ; Navarro, Silvia A; Manzano, Marisa ; Vizzini, Priya ; Krasnogor, Natalio

Light-up split Broccoli aptamer as a versatile tool for RNA assembly monitoring in cell-free TX-TL system, hybrid RNA/DNA origami tagging and DNA biosensing Journal Article

bioRxiv, 2022.07.20.500791v1 , 2022.

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Huang, Yiming; Sinha, Nishant ; Wipat, Anil ; Bacardit, Jaume

A knowledge integration strategy for the selection of a robust multi-stress biomarkers panel for Bacillus subtilis Journal Article

bioRxiv, 2022.06.20.496894v1 , 2022.

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Jiang, Shouyong; Otero-Muras, Irene ; Banga, Julio R; Wang, Yong ; Kaiser, Marcus ; Krasnogor, Natalio

OptDesign: Identifying Optimum Design Strategies in Strain Engineering for Biochemical Production Journal Article

ACS Synthetic Biology, 11 (4), pp. 1531–1541, 2022.

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Tellechea-Luzardo, J; Hobbs, L

Versioning biological cells for trustworthy cell engineering Journal Article

Nature Communications, 13 (765), pp. 12, 2022.

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Li, Bowen; Mackenzie, Neil ; Shirt-Ediss, Ben ; Krasnogor, Natalio ; Zuliani, Paolo

Modelling and Optimisation of a DNA Stack Nano-Device Using Probabilistic Model Checking Inproceedings

28th International Conference on DNA Computing and Molecular Programming (DNA 28), pp. 1–22, Dagstuhl, Germany, 2022.

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Lopiccolo, Annunziata; Shirt-Ediss, Ben ; Torelli, Emanuela ; Olulana, Abimbola Feyisara Adedeji ; Castronovo, Matteo ; Fellermann, Harold ; Krasnogor, Natalio

A last-in first-out stack data structure implemented in DNA Journal Article

Nature Communications, 12 (1), 2021.

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Guyet, Aurelie; Alofi, Amirah ; Daniel, Richard

Insights into the role of lipoteichoic acids in Bacillus subtilis- a new function for MprF Journal Article

Biorxiv, N/A (N/A), pp. 1, 2021.

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Mısırlı, Göksel; Yang, Bill ; James, Katherine ; Wipat, Anil

Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits Journal Article

ACS Synthetic Biology, 10 (12), pp. 3304–3315, 2021, (Portabolomics paper).

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Velázquez, Elena; Al-Ramahi, Yamal ; Tellechea-Luzardo, Jonathan ; Krasnogor, Natalio ; de Lorenzo, Víctor

Targetron-Assisted Delivery of Exogenous DNA Sequences into Pseudomonas putida through CRISPR-Aided Counterselection Journal Article

ACS Synthetic Biology, 10 (10), pp. 2552–2565, 2021.

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Konur, Savas; Mierla, Laurentiu ; Fellermann, Harold ; Ladroue, Christophe ; Brown, Bradley ; Wipat, Anil ; Twycross, Jamie ; Dun, Boyang Peter ; Kalvala, Sara ; Gheorghe, Marian ; Krasnogor, Natalio

Toward Full-Stack In Silico Synthetic Biology: Integrating Model Specification, Simulation, Verification, and Biological Compilation Journal Article

ACS Synthetic Biology, 10 (8), pp. 1931–1945, 2021.

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Mitchell, Anca Manuela; Gogulancea, Valentina ; Smith, Wendy ; Wipat, Anil ; Ofiţeru, Irina Dana

Recombinant Protein Production with Escherichia coli in Glucose and Glycerol Limited Chemostats Journal Article

Applied Microbiology, 1 (2), pp. 239–254, 2021.

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Huang, Yiming; Smith, Wendy ; Harwood, Colin ; Wipat, Anil ; Bacardit, Jaume

Computational Strategies for the Identification of a Transcriptional Biomarker Panel to Sense Cellular Growth States in Bacillus subtilis Journal Article

Sensors, 21 (7), pp. 2436, 2021.

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de Lorenzo, Víctor; Krasnogor, Natalio ; Schmidt, Markus

For the sake of the Bioeconomy: define what a Synthetic Biology Chassis is! Journal Article

New Biotechnology, 60 (C), pp. 44–51, 2021.

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Callaghan, Melanie M; Koch, Birgit ; Hackett, Kathleen T; Klimowicz, Amy K; Schaub, Ryan E; Krasnogor, Natalio ; Dillard, Joseph P

Expression, Localization, and Protein Interactions of the Partitioning Proteins in the Gonococcal Type IV Secretion System Journal Article

Frontiers in Microbiology, 12 , 2021.

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Choo, Siew Woh; Mohammed, Waleed K; Mutha, Naresh V R; Rostami, Nadia ; Ahmed, Halah ; Krasnogor, Natalio ; Tan, Geok Yuan Annie ; Jakubovics, Nicholas S

Transcriptomic Responses to Coaggregation between Streptococcus gordonii and Streptococcus oralis Journal Article

Applied and Environmental Microbiology, 87 (22), 2021.

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Wu, Ling Juan; Lee, Seoungjun ; Park, Sungshic ; Eland, Lucy E; Wipat, Anil ; Holden, Séamus ; Errington, Jeff

Geometric principles underlying the proliferation of a model cell system Journal Article

Nature Communications, 11 (1), 2020.

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Vasileva, Mariia; Shmarov, Fedor ; Zuliani, Paolo

Probabilistic Reachability for Uncertain Stochastic Hybrid Systems via Gaussian Processes Inproceedings

2020 18th ACM-IEEE International Conference on Formal Methods and Models for System Design (MEMOCODE), pp. 1–11, Jaipur, India, 2020.

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Sidiq, Karzan R; Chow, Man W; Zhao, Zhao ; Daniel, Richard A

Alanine Metabolism in Bacillus subtilis Journal Article

Molecular Microbiology, 2020.

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Wipat, Anil

The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering Journal Article

Frontiers in Bioengineering and Biotechnology, 8 (1009), pp. 15, 2020.

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McLaughlin, James Alastair; Beal, Jacob ; Mısırlı, Göksel ; Grünberg, Raik ; Bartley, Bryan A; Scott-Brown, James ; Vaidyanathan, Prashant ; Fontanarrosa, Pedro ; Oberortner, Ernst ; Wipat, Anil ; Gorochowski, Thomas E; Myers, Chris J

The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering Journal Article

Frontiers in Bioengineering and Biotechnology, 8 , 2020.

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81 entries « 1 of 5 »