Tellechea-Luzardo, J; Hobbs, L Versioning biological cells for trustworthy cell engineering Journal Article Nature Communications, 13 (765), pp. 12, 2022. @article{Tellechea-Luzardo2022, title = {Versioning biological cells for trustworthy cell engineering}, author = { J Tellechea-Luzardo and L Hobbs}, url = {http://dx.doi.org/10.1038/s41467-022-28350-4}, year = {2022}, date = {2022-01-01}, journal = {Nature Communications}, volume = {13}, number = {765}, pages = {12}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Lopiccolo, Annunziata; Shirt-Ediss, Ben ; Torelli, Emanuela ; Olulana, Abimbola Feyisara Adedeji ; Castronovo, Matteo ; Fellermann, Harold ; Krasnogor, Natalio A last-in first-out stack data structure implemented in DNA Journal Article Nature Communications, 12 (1), 2021. @article{Lopiccolo2021, title = {A last-in first-out stack data structure implemented in DNA}, author = { Annunziata Lopiccolo and Ben Shirt-Ediss and Emanuela Torelli and Abimbola Feyisara Adedeji Olulana and Matteo Castronovo and Harold Fellermann and Natalio Krasnogor}, doi = {10.1038/s41467-021-25023-6}, year = {2021}, date = {2021-12-01}, journal = {Nature Communications}, volume = {12}, number = {1}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Guyet, Aurelie; Alofi, Amirah ; Daniel, Richard Insights into the role of lipoteichoic acids in Bacillus subtilis- a new function for MprF Journal Article Biorxiv, N/A (N/A), pp. 1, 2021. @article{Guyet2021, title = {Insights into the role of lipoteichoic acids in Bacillus subtilis- a new function for MprF}, author = { Aurelie Guyet and Amirah Alofi and Richard Daniel}, url = {http://dx.doi.org/10.1101/2021.12.12.472321}, year = {2021}, date = {2021-12-01}, journal = {Biorxiv}, volume = {N/A}, number = {N/A}, pages = {1}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Mitchell, Anca Manuela; Gogulancea, Valentina ; Smith, Wendy ; Wipat, Anil ; Ofiţeru, Irina Dana Recombinant Protein Production with Escherichia coli in Glucose and Glycerol Limited Chemostats Journal Article Applied Microbiology, 1 (2), pp. 239–254, 2021. @article{Mitchell2021, title = {Recombinant Protein Production with Escherichia coli in Glucose and Glycerol Limited Chemostats}, author = { Anca Manuela Mitchell and Valentina Gogulancea and Wendy Smith and Anil Wipat and Irina Dana Ofiţeru}, doi = {10.3390/applmicrobiol1020018}, year = {2021}, date = {2021-07-01}, journal = {Applied Microbiology}, volume = {1}, number = {2}, pages = {239--254}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Huang, Yiming; Smith, Wendy ; Harwood, Colin ; Wipat, Anil ; Bacardit, Jaume Computational Strategies for the Identification of a Transcriptional Biomarker Panel to Sense Cellular Growth States in Bacillus subtilis Journal Article Sensors, 21 (7), pp. 2436, 2021. @article{Huang2021, title = {Computational Strategies for the Identification of a Transcriptional Biomarker Panel to Sense Cellular Growth States in Bacillus subtilis}, author = { Yiming Huang and Wendy Smith and Colin Harwood and Anil Wipat and Jaume Bacardit}, doi = {10.3390/s21072436}, year = {2021}, date = {2021-04-01}, journal = {Sensors}, volume = {21}, number = {7}, pages = {2436}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
de Lorenzo, Víctor; Krasnogor, Natalio ; Schmidt, Markus For the sake of the Bioeconomy: define what a Synthetic Biology Chassis is! Journal Article New Biotechnology, 60 (C), pp. 44–51, 2021. @article{Lorenzo2021, title = {For the sake of the Bioeconomy: define what a Synthetic Biology Chassis is!}, author = { Víctor de Lorenzo and Natalio Krasnogor and Markus Schmidt}, doi = {10.1016/j.nbt.2020.08.004}, year = {2021}, date = {2021-01-01}, journal = {New Biotechnology}, volume = {60}, number = {C}, pages = {44--51}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Wu, Ling Juan; Lee, Seoungjun ; Park, Sungshic ; Eland, Lucy E; Wipat, Anil ; Holden, Séamus ; Errington, Jeff Geometric principles underlying the proliferation of a model cell system Journal Article Nature Communications, 11 (1), 2020. @article{Wu2020, title = {Geometric principles underlying the proliferation of a model cell system}, author = { Ling Juan Wu and Seoungjun Lee and Sungshic Park and Lucy E. Eland and Anil Wipat and Séamus Holden and Jeff Errington}, doi = {10.1038/s41467-020-17988-7}, year = {2020}, date = {2020-12-01}, journal = {Nature Communications}, volume = {11}, number = {1}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Vasileva, Mariia; Shmarov, Fedor ; Zuliani, Paolo Probabilistic Reachability for Uncertain Stochastic Hybrid Systems via Gaussian Processes Inproceedings 2020 18th ACM-IEEE International Conference on Formal Methods and Models for System Design (MEMOCODE), pp. 1–11, Jaipur, India, 2020. @inproceedings{Vasileva2020, title = {Probabilistic Reachability for Uncertain Stochastic Hybrid Systems via Gaussian Processes}, author = { Mariia Vasileva and Fedor Shmarov and Paolo Zuliani}, url = {http://dx.doi.org/10.1109/MEMOCODE51338.2020.9315182}, doi = {10.1109/MEMOCODE51338.2020.9315182}, year = {2020}, date = {2020-12-01}, booktitle = {2020 18th ACM-IEEE International Conference on Formal Methods and Models for System Design (MEMOCODE)}, pages = {1--11}, address = {Jaipur, India}, keywords = {}, pubstate = {published}, tppubtype = {inproceedings} } |
Sidiq, Karzan R; Chow, Man W; Zhao, Zhao ; Daniel, Richard A Alanine Metabolism in Bacillus subtilis Journal Article Molecular Microbiology, 2020. @article{Sidiq2020, title = {Alanine Metabolism in Bacillus subtilis}, author = { Karzan R. Sidiq and Man W. Chow and Zhao Zhao and Richard A. Daniel}, doi = {10.1111/mmi.14640}, year = {2020}, date = {2020-11-01}, journal = {Molecular Microbiology}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Wipat, Anil The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering Journal Article Frontiers in Bioengineering and Biotechnology, 8 (1009), pp. 15, 2020. @article{Wipat2020b, title = {The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering}, author = { Anil Wipat}, url = {http://dx.doi.org/10.3389/fbioe.2020.01009}, year = {2020}, date = {2020-09-01}, journal = {Frontiers in Bioengineering and Biotechnology}, volume = {8}, number = {1009}, pages = {15}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
McLaughlin, James Alastair; Beal, Jacob ; Mısırlı, Göksel ; Grünberg, Raik ; Bartley, Bryan A; Scott-Brown, James ; Vaidyanathan, Prashant ; Fontanarrosa, Pedro ; Oberortner, Ernst ; Wipat, Anil ; Gorochowski, Thomas E; Myers, Chris J The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering Journal Article Frontiers in Bioengineering and Biotechnology, 8 , 2020. @article{McLaughlin2020, title = {The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering}, author = { James Alastair McLaughlin and Jacob Beal and Göksel Mısırlı and Raik Grünberg and Bryan A. Bartley and James Scott-Brown and Prashant Vaidyanathan and Pedro Fontanarrosa and Ernst Oberortner and Anil Wipat and Thomas E. Gorochowski and Chris J. Myers}, doi = {10.3389/fbioe.2020.01009}, year = {2020}, date = {2020-09-01}, journal = {Frontiers in Bioengineering and Biotechnology}, volume = {8}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Franco, Maria A; Krasnogor, Natalio ; Bacardit, Jaume Automatic Tuning of Rule-Based Evolutionary Machine Learning via Problem Structure Identification Journal Article IEEE Computational Intelligence Magazine, 15 (3), pp. 28–46, 2020. @article{Franco2020, title = {Automatic Tuning of Rule-Based Evolutionary Machine Learning via Problem Structure Identification}, author = { Maria A. Franco and Natalio Krasnogor and Jaume Bacardit}, doi = {10.1109/MCI.2020.2998232}, year = {2020}, date = {2020-08-01}, journal = {IEEE Computational Intelligence Magazine}, volume = {15}, number = {3}, pages = {28--46}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Koch, Birgit; Callaghan, Melanie M; Tellechea‐Luzardo, Jonathan ; Seeger, Ami Y; Dillard, Joseph P; Krasnogor, Natalio Protein interactions within and between two F‐type type IV secretion systems Journal Article Molecular Microbiology, 2020. @article{Koch2020, title = {Protein interactions within and between two F‐type type IV secretion systems}, author = { Birgit Koch and Melanie M. Callaghan and Jonathan Tellechea‐Luzardo and Ami Y. Seeger and Joseph P. Dillard and Natalio Krasnogor}, doi = {10.1111/mmi.14582}, year = {2020}, date = {2020-08-01}, journal = {Molecular Microbiology}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Torelli, Emanuela; Kozyra, Jerzy ; Shirt-Ediss, Ben ; Piantanida, Luca ; Voïtchovsky, Kislon ; Krasnogor, Natalio Cotranscriptional Folding of a Bio-orthogonal Fluorescent Scaffolded RNA Origami Journal Article ACS Synthetic Biology, 9 (7), pp. 1682–1692, 2020. @article{Torelli2020, title = {Cotranscriptional Folding of a Bio-orthogonal Fluorescent Scaffolded RNA Origami}, author = { Emanuela Torelli and Jerzy Kozyra and Ben Shirt-Ediss and Luca Piantanida and Kislon Voïtchovsky and Natalio Krasnogor}, doi = {10.1021/acssynbio.0c00009}, year = {2020}, date = {2020-07-01}, journal = {ACS Synthetic Biology}, volume = {9}, number = {7}, pages = {1682--1692}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Kaiser, Marcus Computational models and fundamental constraints can inform the design of synthetic connectomes Journal Article Physics of Life Reviews, 33 (C), pp. 16–18, 2020. @article{Kaiser2020, title = {Computational models and fundamental constraints can inform the design of synthetic connectomes}, author = { Marcus Kaiser}, doi = {10.1016/j.plrev.2019.08.003}, year = {2020}, date = {2020-07-01}, journal = {Physics of Life Reviews}, volume = {33}, number = {C}, pages = {16--18}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Wipat, Anil Codon optimisation for maximising gene expression in multiple species and microbial consortia Journal Article Biorxiv, Preprint only (Preprint only), pp. 14, 2020. @article{Wipat2020, title = {Codon optimisation for maximising gene expression in multiple species and microbial consortia}, author = { Anil Wipat}, url = {http://dx.doi.org/10.1101/2020.06.30.177766}, year = {2020}, date = {2020-07-01}, journal = {Biorxiv}, volume = {Preprint only}, number = {Preprint only}, pages = {14}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Jiang, Shouyong; Wang, Yong ; Kaiser, Marcus ; Krasnogor, Natalio NIHBA: a network interdiction approach for metabolic engineering design Journal Article Bioinformatics, 36 (11), pp. 3482–3492, 2020. @article{Jiang2020, title = {NIHBA: a network interdiction approach for metabolic engineering design}, author = { Shouyong Jiang and Yong Wang and Marcus Kaiser and Natalio Krasnogor}, doi = {10.1093/bioinformatics/btaa163}, year = {2020}, date = {2020-06-01}, journal = {Bioinformatics}, volume = {36}, number = {11}, pages = {3482--3492}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Jiang, Shouyong; Li, Hongru ; Guo, Jinglei ; Zhong, Mingjun ; Yang, Shengxiang ; Kaiser, Marcus ; Krasnogor, Natalio AREA: An adaptive reference-set based evolutionary algorithm for multiobjective optimisation Journal Article Information Sciences, 515 (C), pp. 365–387, 2020. @article{Jiang2020a, title = {AREA: An adaptive reference-set based evolutionary algorithm for multiobjective optimisation}, author = { Shouyong Jiang and Hongru Li and Jinglei Guo and Mingjun Zhong and Shengxiang Yang and Marcus Kaiser and Natalio Krasnogor}, doi = {10.1016/j.ins.2019.12.011}, year = {2020}, date = {2020-04-01}, journal = {Information Sciences}, volume = {515}, number = {C}, pages = {365--387}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Taylor, Ken; Woods, Simon Reflections on the practice of Responsible (Research and) Innovation in synthetic biology Journal Article New Genetics and Society, 39 (2), pp. 127–147, 2020. @article{Taylor2020, title = {Reflections on the practice of Responsible (Research and) Innovation in synthetic biology}, author = { Ken Taylor and Simon Woods}, doi = {10.1080/14636778.2019.1709431}, year = {2020}, date = {2020-04-01}, journal = {New Genetics and Society}, volume = {39}, number = {2}, pages = {127--147}, keywords = {}, pubstate = {published}, tppubtype = {article} } |
Mısırlı, Göksel; Beal, Jacob ; Gorochowski, Thomas E; Stan, Guy-Bart ; Wipat, Anil ; Myers, Chris J SBOL Visual 2 Ontology Journal Article ACS Synthetic Biology, 9 (4), pp. 972–977, 2020. @article{Misirli2020, title = {SBOL Visual 2 Ontology}, author = { Göksel Mısırlı and Jacob Beal and Thomas E. Gorochowski and Guy-Bart Stan and Anil Wipat and Chris J. Myers}, doi = {10.1021/acssynbio.0c00046}, year = {2020}, date = {2020-04-01}, journal = {ACS Synthetic Biology}, volume = {9}, number = {4}, pages = {972--977}, keywords = {}, pubstate = {published}, tppubtype = {article} } |